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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-25001103-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=25001103&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 25001103,
"ref": "T",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000289968.11",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "NM_001006634.3",
"protein_id": "NP_001006635.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 881,
"cds_start": -4,
"cds_end": null,
"cds_length": 2646,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3495,
"mane_select": "ENST00000289968.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "ENST00000289968.11",
"protein_id": "ENSP00000289968.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 881,
"cds_start": -4,
"cds_end": null,
"cds_length": 2646,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3495,
"mane_select": "NM_001006634.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "ENST00000303665.9",
"protein_id": "ENSP00000303130.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 803,
"cds_start": -4,
"cds_end": null,
"cds_length": 2412,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3219,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "n.53+14106A>T",
"hgvs_p": null,
"transcript": "ENST00000575975.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 681,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "NM_018054.6",
"protein_id": "NP_060524.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 803,
"cds_start": -4,
"cds_end": null,
"cds_length": 2412,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3261,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.50+12760A>T",
"hgvs_p": null,
"transcript": "ENST00000455311.6",
"protein_id": "ENSP00000406701.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 210,
"cds_start": -4,
"cds_end": null,
"cds_length": 633,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 810,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.-179+14398A>T",
"hgvs_p": null,
"transcript": "ENST00000573449.5",
"protein_id": "ENSP00000461426.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 75,
"cds_start": -4,
"cds_end": null,
"cds_length": 230,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 574,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "n.53+14106A>T",
"hgvs_p": null,
"transcript": "ENST00000571480.5",
"protein_id": "ENSP00000459074.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 645,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "n.53+14106A>T",
"hgvs_p": null,
"transcript": "ENST00000573625.5",
"protein_id": "ENSP00000461411.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 602,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "n.129+14106A>T",
"hgvs_p": null,
"transcript": "ENST00000575447.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 559,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "XM_011545873.4",
"protein_id": "XP_011544175.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 913,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.50+12760A>T",
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"transcript": "XM_047434311.1",
"protein_id": "XP_047290267.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 22,
"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "XM_011545875.3",
"protein_id": "XP_011544177.1",
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"aa_start": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.50+12760A>T",
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"transcript": "XM_047434312.1",
"protein_id": "XP_047290268.1",
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},
{
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],
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"gene_symbol": "ARHGAP17",
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"hgvs_c": "c.53+14106A>T",
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"transcript": "XM_011545876.3",
"protein_id": "XP_011544178.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 21,
"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "XM_047434313.1",
"protein_id": "XP_047290269.1",
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},
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],
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"gene_symbol": "ARHGAP17",
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"hgvs_c": "c.53+14106A>T",
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"transcript": "XM_047434314.1",
"protein_id": "XP_047290270.1",
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},
{
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"strand": false,
"consequences": [
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],
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"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.-179+13573A>T",
"hgvs_p": null,
"transcript": "XM_047434315.1",
"protein_id": "XP_047290271.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
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"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "XM_011545878.4",
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},
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],
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"gene_symbol": "ARHGAP17",
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"hgvs_c": "c.53+14106A>T",
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},
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],
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"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
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"intron_rank": 1,
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"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.53+14106A>T",
"hgvs_p": null,
"transcript": "XM_047434318.1",
"protein_id": "XP_047290274.1",
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"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ARHGAP17",
"gene_hgnc_id": 18239,
"hgvs_c": "c.50+12760A>T",
"hgvs_p": null,
"transcript": "XM_047434319.1",
"protein_id": "XP_047290275.1",
"transcript_support_level": null,
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"cds_start": -4,
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"cdna_start": null,
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{
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"verdict": "Benign",
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],
"clinvar_disease": "",
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"clinvar_review_status": "",
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"custom_annotations": null
}
],
"message": null
}