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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-28866155-CCC-AGT (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=28866155&ref=CCC&alt=AGT&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "SH2B1",
          "hgnc_id": 30417,
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "inheritance_mode": "AD",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "NM_001145795.2",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_score": 0,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "AGT",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "16",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4908,
          "cdna_start": 2313,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001387430.1",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000684370.1",
          "protein_coding": true,
          "protein_id": "NP_001374359.1",
          "strand": true,
          "transcript": "NM_001387430.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 4908,
          "cdna_start": 2313,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000684370.1",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001387430.1",
          "protein_coding": true,
          "protein_id": "ENSP00000507475.1",
          "strand": true,
          "transcript": "ENST00000684370.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2935,
          "cdna_start": 333,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000618521.4",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000481709.1",
          "strand": true,
          "transcript": "ENST00000618521.4",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 683,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2995,
          "cdna_start": 247,
          "cds_end": null,
          "cds_length": 2052,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000359285.10",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000352232.5",
          "strand": true,
          "transcript": "ENST00000359285.10",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 671,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6043,
          "cdna_start": 3352,
          "cds_end": null,
          "cds_length": 2016,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000337120.9",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000337163.5",
          "strand": true,
          "transcript": "ENST00000337120.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2842,
          "cdna_start": 247,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001145795.2",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001139267.1",
          "strand": true,
          "transcript": "NM_001145795.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3178,
          "cdna_start": 583,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001308293.2",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001295222.1",
          "strand": true,
          "transcript": "NM_001308293.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3048,
          "cdna_start": 453,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001387404.1",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001374333.1",
          "strand": true,
          "transcript": "NM_001387404.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3095,
          "cdna_start": 500,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000322610.12",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000321221.7",
          "strand": true,
          "transcript": "ENST00000322610.12",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2950,
          "cdna_start": 355,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000893539.1",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000563598.1",
          "strand": true,
          "transcript": "ENST00000893539.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 756,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3161,
          "cdna_start": 559,
          "cds_end": null,
          "cds_length": 2271,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000942394.1",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000612453.1",
          "strand": true,
          "transcript": "ENST00000942394.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 683,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2995,
          "cdna_start": 247,
          "cds_end": null,
          "cds_length": 2052,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001145797.2",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001139269.1",
          "strand": true,
          "transcript": "NM_001145797.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 671,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2942,
          "cdna_start": 247,
          "cds_end": null,
          "cds_length": 2016,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001145796.2",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001139268.1",
          "strand": true,
          "transcript": "NM_001145796.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 671,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3259,
          "cdna_start": 564,
          "cds_end": null,
          "cds_length": 2016,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001145812.2",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001139284.1",
          "strand": true,
          "transcript": "NM_001145812.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 671,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5008,
          "cdna_start": 2313,
          "cds_end": null,
          "cds_length": 2016,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_015503.3",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_056318.2",
          "strand": true,
          "transcript": "NM_015503.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 671,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2529,
          "cdna_start": 432,
          "cds_end": null,
          "cds_length": 2016,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000395532.8",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000378903.4",
          "strand": true,
          "transcript": "ENST00000395532.8",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 671,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2942,
          "cdna_start": 247,
          "cds_end": null,
          "cds_length": 2016,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000707128.1",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000516756.1",
          "strand": true,
          "transcript": "ENST00000707128.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 62,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 588,
          "cdna_start": 459,
          "cds_end": null,
          "cds_length": 190,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000563591.5",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000458097.1",
          "strand": true,
          "transcript": "ENST00000563591.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 55,
          "aa_ref": "P",
          "aa_start": 21,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 533,
          "cdna_start": 424,
          "cds_end": null,
          "cds_length": 170,
          "cds_start": 61,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000566209.1",
          "gene_hgnc_id": 30417,
          "gene_symbol": "SH2B1",
          "hgvs_c": "c.61_63delCCCinsAGT",
          "hgvs_p": "p.Pro21Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.