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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-31180236-GGGC-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=31180236&ref=GGGC&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 31180236,
"ref": "GGGC",
"alt": "G",
"effect": "intron_variant",
"transcript": "NM_004960.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+11_13+13delGCG",
"hgvs_p": null,
"transcript": "NM_004960.4",
"protein_id": "NP_004951.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 526,
"cds_start": null,
"cds_end": null,
"cds_length": 1581,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000254108.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_004960.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000254108.12",
"protein_id": "ENSP00000254108.8",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 526,
"cds_start": null,
"cds_end": null,
"cds_length": 1581,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_004960.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000254108.12"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000380244.8",
"protein_id": "ENSP00000369594.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 525,
"cds_start": null,
"cds_end": null,
"cds_length": 1578,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380244.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "n.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000566605.5",
"protein_id": "ENSP00000455073.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000566605.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000925805.1",
"protein_id": "ENSP00000595863.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 533,
"cds_start": null,
"cds_end": null,
"cds_length": 1602,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925805.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000948616.1",
"protein_id": "ENSP00000618675.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 532,
"cds_start": null,
"cds_end": null,
"cds_length": 1599,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948616.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000568685.1",
"protein_id": "ENSP00000455282.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 527,
"cds_start": null,
"cds_end": null,
"cds_length": 1584,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000568685.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000875021.1",
"protein_id": "ENSP00000545080.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 526,
"cds_start": null,
"cds_end": null,
"cds_length": 1581,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875021.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+11_13+13delGCG",
"hgvs_p": null,
"transcript": "NM_001170634.1",
"protein_id": "NP_001164105.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 525,
"cds_start": null,
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"cds_length": 1578,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001170634.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000715542.1",
"protein_id": "ENSP00000520462.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 524,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000715542.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "FUS",
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"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000875027.1",
"protein_id": "ENSP00000545086.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "FUS",
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"hgvs_c": "c.13+10_13+12delGGC",
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"transcript": "ENST00000948617.1",
"protein_id": "ENSP00000618676.1",
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"biotype": "protein_coding",
"feature": "ENST00000948617.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "FUS",
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},
{
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],
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"gene_symbol": "FUS",
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},
{
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"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
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"transcript": "ENST00000925796.1",
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},
{
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],
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},
{
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"strand": true,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "FUS",
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"hgvs_c": "c.13+11_13+13delGCG",
"hgvs_p": null,
"transcript": "NM_001170937.1",
"protein_id": "NP_001164408.1",
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"biotype": "protein_coding",
"feature": "NM_001170937.1"
},
{
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"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000875024.1",
"protein_id": "ENSP00000545083.1",
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},
{
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],
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"intron_rank": 1,
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"gene_symbol": "FUS",
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},
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],
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},
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],
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"gene_symbol": "FUS",
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"transcript": "ENST00000925800.1",
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"biotype": "protein_coding",
"feature": "ENST00000925800.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"hgvs_c": "c.13+10_13+12delGGC",
"hgvs_p": null,
"transcript": "ENST00000925797.1",
"protein_id": "ENSP00000595856.1",
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"cdna_start": null,
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"mane_select": null,
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"feature": "ENST00000925797.1"
},
{
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"consequences": [
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"hgvs_p": null,
"transcript": "NR_028388.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_028388.2"
}
],
"gene_symbol": "FUS",
"gene_hgnc_id": 4010,
"dbsnp": "rs1057518893",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": 0.09000000357627869,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 1.843,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.09,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_004960.4",
"gene_symbol": "FUS",
"hgnc_id": 4010,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD,AR,Unknown",
"hgvs_c": "c.13+11_13+13delGCG",
"hgvs_p": null
}
],
"clinvar_disease": "Amyotrophic lateral sclerosis type 6,Dystonic disorder,Myoclonus",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:2",
"phenotype_combined": "Dystonic disorder;Myoclonus|Amyotrophic lateral sclerosis type 6",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}