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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-4380944-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=4380944&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "16",
      "pos": 4380944,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_138440.3",
      "consequences": [
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VASN",
          "gene_hgnc_id": 18517,
          "hgvs_c": "c.67G>A",
          "hgvs_p": "p.Gly23Ser",
          "transcript": "NM_138440.3",
          "protein_id": "NP_612449.2",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 673,
          "cds_start": 67,
          "cds_end": null,
          "cds_length": 2022,
          "cdna_start": 222,
          "cdna_end": null,
          "cdna_length": 2816,
          "mane_select": "ENST00000304735.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_138440.3"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VASN",
          "gene_hgnc_id": 18517,
          "hgvs_c": "c.67G>A",
          "hgvs_p": "p.Gly23Ser",
          "transcript": "ENST00000304735.4",
          "protein_id": "ENSP00000306864.3",
          "transcript_support_level": 1,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 673,
          "cds_start": 67,
          "cds_end": null,
          "cds_length": 2022,
          "cdna_start": 222,
          "cdna_end": null,
          "cdna_length": 2816,
          "mane_select": "NM_138440.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000304735.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "CORO7",
          "gene_hgnc_id": 26161,
          "hgvs_c": "c.785+7042C>T",
          "hgvs_p": null,
          "transcript": "NM_024535.5",
          "protein_id": "NP_078811.3",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3472,
          "mane_select": "ENST00000251166.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_024535.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "CORO7",
          "gene_hgnc_id": 26161,
          "hgvs_c": "c.785+7042C>T",
          "hgvs_p": null,
          "transcript": "ENST00000251166.9",
          "protein_id": "ENSP00000251166.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3472,
          "mane_select": "NM_024535.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000251166.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "CORO7-PAM16",
          "gene_hgnc_id": 44424,
          "hgvs_c": "c.785+7042C>T",
          "hgvs_p": null,
          "transcript": "ENST00000572467.5",
          "protein_id": "ENSP00000460885.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1048,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3147,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3284,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000572467.5"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VASN",
          "gene_hgnc_id": 18517,
          "hgvs_c": "c.67G>A",
          "hgvs_p": "p.Gly23Ser",
          "transcript": "ENST00000899068.1",
          "protein_id": "ENSP00000569127.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 673,
          "cds_start": 67,
          "cds_end": null,
          "cds_length": 2022,
          "cdna_start": 216,
          "cdna_end": null,
          "cdna_length": 2786,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899068.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VASN",
          "gene_hgnc_id": 18517,
          "hgvs_c": "c.67G>A",
          "hgvs_p": "p.Gly23Ser",
          "transcript": "ENST00000899069.1",
          "protein_id": "ENSP00000569128.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 673,
          "cds_start": 67,
          "cds_end": null,
          "cds_length": 2022,
          "cdna_start": 437,
          "cdna_end": null,
          "cdna_length": 3007,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000899069.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VASN",
          "gene_hgnc_id": 18517,
          "hgvs_c": "c.67G>A",
          "hgvs_p": "p.Gly23Ser",
          "transcript": "ENST00000952355.1",
          "protein_id": "ENSP00000622414.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 673,
          "cds_start": 67,
          "cds_end": null,
          "cds_length": 2022,
          "cdna_start": 268,
          "cdna_end": null,
          "cdna_length": 2818,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000952355.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "CORO7-PAM16",
          "gene_hgnc_id": 44424,
          "hgvs_c": "c.785+7042C>T",
          "hgvs_p": null,
          "transcript": "NM_001201479.2",
          "protein_id": "NP_001188408.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1048,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3147,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3293,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001201479.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "CORO7",
          "gene_hgnc_id": 26161,
          "hgvs_c": "c.872+7042C>T",
          "hgvs_p": null,
          "transcript": "ENST00000898828.1",
          "protein_id": "ENSP00000568887.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 954,
          "cds_start": null,
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          "cds_length": 2865,
          "cdna_start": null,
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          "cdna_length": 3560,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000898828.1"
        },
        {
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          "strand": false,
          "consequences": [
            "intron_variant"
          ],
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          "exon_count": 28,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "CORO7",
          "gene_hgnc_id": 26161,
          "hgvs_c": "c.785+7042C>T",
          "hgvs_p": null,
          "transcript": "ENST00000898827.1",
          "protein_id": "ENSP00000568886.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 927,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": 3479,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000898827.1"
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        {
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          "intron_rank": 9,
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          "gene_symbol": "CORO7",
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          "hgvs_c": "c.731+7042C>T",
          "hgvs_p": null,
          "transcript": "NM_001201472.2",
          "protein_id": "NP_001188401.1",
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          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
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        {
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          ],
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          "intron_rank": 9,
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          "hgvs_c": "c.731+7042C>T",
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          "transcript": "ENST00000537233.6",
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        {
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          "intron_rank": 9,
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          "gene_symbol": "CORO7",
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          "hgvs_c": "c.785+7042C>T",
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          "transcript": "ENST00000898829.1",
          "protein_id": "ENSP00000568888.1",
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          "mane_select": null,
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        {
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          ],
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          "intron_rank": 7,
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          "gene_symbol": "CORO7",
          "gene_hgnc_id": 26161,
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          "transcript": "ENST00000574025.5",
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        {
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          "intron_rank": 9,
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          "gene_symbol": "CORO7",
          "gene_hgnc_id": 26161,
          "hgvs_c": "c.125+7042C>T",
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          "transcript": "NM_001351729.2",
          "protein_id": "NP_001338658.1",
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          "gene_symbol": "CORO7",
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        {
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          "gene_symbol": "CORO7",
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        },
        {
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          "protein_coding": false,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 29,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "CORO7",
          "gene_hgnc_id": 26161,
          "hgvs_c": "n.*721+7042C>T",
          "hgvs_p": null,
          "transcript": "ENST00000571227.5",
          "protein_id": "ENSP00000458459.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
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          "cdna_start": null,
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          "cdna_length": 3578,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000571227.5"
        },
        {
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      "computational_source_selected": "MetaRNN",
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "alphamissense_prediction": "Benign",
      "bayesdelnoaf_score": -0.24,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 1.295,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
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      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
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          "score": 0,
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          "pathogenic_score": 2,
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            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_138440.3",
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        {
          "score": 0,
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            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001201479.2",
          "gene_symbol": "CORO7-PAM16",
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          "effects": [
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          ],
          "inheritance_mode": "",
          "hgvs_c": "c.785+7042C>T",
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        {
          "score": 0,
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          "criteria": [
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            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_024535.5",
          "gene_symbol": "CORO7",
          "hgnc_id": 26161,
          "effects": [
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          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.785+7042C>T",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.