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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-50304475-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=50304475&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "16",
      "pos": 50304475,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "ENST00000673801.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "NM_001114.5",
          "protein_id": "NP_001105.1",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 1080,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 3243,
          "cdna_start": 1882,
          "cdna_end": null,
          "cdna_length": 6271,
          "mane_select": "ENST00000673801.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "ENST00000673801.1",
          "protein_id": "ENSP00000501053.1",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 1080,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 3243,
          "cdna_start": 1882,
          "cdna_end": null,
          "cdna_length": 6271,
          "mane_select": "NM_001114.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "ENST00000254235.7",
          "protein_id": "ENSP00000254235.3",
          "transcript_support_level": 1,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 1080,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 3243,
          "cdna_start": 1752,
          "cdna_end": null,
          "cdna_length": 6138,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "n.1484G>A",
          "hgvs_p": null,
          "transcript": "ENST00000567277.6",
          "protein_id": "ENSP00000455670.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2304,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "ENST00000394697.7",
          "protein_id": "ENSP00000378187.2",
          "transcript_support_level": 5,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 1080,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 3243,
          "cdna_start": 1789,
          "cdna_end": null,
          "cdna_length": 6178,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "NM_001286057.2",
          "protein_id": "NP_001272986.1",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 734,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 2205,
          "cdna_start": 1789,
          "cdna_end": null,
          "cdna_length": 2541,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "ENST00000566433.6",
          "protein_id": "ENSP00000457409.2",
          "transcript_support_level": 5,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 734,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 2205,
          "cdna_start": 1789,
          "cdna_end": null,
          "cdna_length": 2535,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "XM_011522835.3",
          "protein_id": "XP_011521137.1",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 1086,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 3261,
          "cdna_start": 1820,
          "cdna_end": null,
          "cdna_length": 6227,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "XM_011522836.3",
          "protein_id": "XP_011521138.1",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 1086,
          "cds_start": 1484,
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          "cdna_start": 1882,
          "cdna_end": null,
          "cdna_length": 6289,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY7",
          "gene_hgnc_id": 238,
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln",
          "transcript": "XM_011522837.4",
          "protein_id": "XP_011521139.1",
          "transcript_support_level": null,
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          "cdna_start": 1786,
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        {
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          "intron_rank": null,
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          "hgvs_c": "c.1484G>A",
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          "transcript": "XM_011522838.3",
          "protein_id": "XP_011521140.1",
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          "cds_start": 1484,
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          "cdna_start": 1935,
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          "mane_select": null,
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        {
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          ],
          "exon_rank": 11,
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          "gene_symbol": "ADCY7",
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          "hgvs_c": "c.1484G>A",
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        {
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          ],
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          "hgvs_c": "c.1484G>A",
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          "transcript": "XM_011522842.3",
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        {
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          "transcript": "XM_047433551.1",
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        {
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          "hgvs_c": "c.1484G>A",
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        },
        {
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          ],
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          "gene_symbol": "ADCY7",
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      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.1625,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.12,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 6.296,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000673801.1",
          "gene_symbol": "ADCY7",
          "hgnc_id": 238,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1484G>A",
          "hgvs_p": "p.Arg495Gln"
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}