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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-56389364-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=56389364&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 56389364,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001323512.2",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "NM_001144.6",
"protein_id": "NP_001135.3",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 643,
"cds_start": 1097,
"cds_end": null,
"cds_length": 1932,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000290649.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001144.6"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "ENST00000290649.10",
"protein_id": "ENSP00000290649.5",
"transcript_support_level": 1,
"aa_start": 366,
"aa_end": null,
"aa_length": 643,
"cds_start": 1097,
"cds_end": null,
"cds_length": 1932,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001144.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000290649.10"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "NM_001323512.2",
"protein_id": "NP_001310441.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 675,
"cds_start": 1097,
"cds_end": null,
"cds_length": 2028,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001323512.2"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "ENST00000861442.1",
"protein_id": "ENSP00000531501.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 637,
"cds_start": 1097,
"cds_end": null,
"cds_length": 1914,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861442.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "ENST00000861443.1",
"protein_id": "ENSP00000531502.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 633,
"cds_start": 1097,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861443.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1058G>T",
"hgvs_p": "p.Arg353Leu",
"transcript": "ENST00000861447.1",
"protein_id": "ENSP00000531506.1",
"transcript_support_level": null,
"aa_start": 353,
"aa_end": null,
"aa_length": 630,
"cds_start": 1058,
"cds_end": null,
"cds_length": 1893,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861447.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1025G>T",
"hgvs_p": "p.Arg342Leu",
"transcript": "ENST00000861439.1",
"protein_id": "ENSP00000531498.1",
"transcript_support_level": null,
"aa_start": 342,
"aa_end": null,
"aa_length": 619,
"cds_start": 1025,
"cds_end": null,
"cds_length": 1860,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861439.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "ENST00000861444.1",
"protein_id": "ENSP00000531503.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 615,
"cds_start": 1097,
"cds_end": null,
"cds_length": 1848,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861444.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.986G>T",
"hgvs_p": "p.Arg329Leu",
"transcript": "ENST00000861441.1",
"protein_id": "ENSP00000531500.1",
"transcript_support_level": null,
"aa_start": 329,
"aa_end": null,
"aa_length": 606,
"cds_start": 986,
"cds_end": null,
"cds_length": 1821,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861441.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "ENST00000957771.1",
"protein_id": "ENSP00000627830.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 598,
"cds_start": 1097,
"cds_end": null,
"cds_length": 1797,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000957771.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.932G>T",
"hgvs_p": "p.Arg311Leu",
"transcript": "ENST00000957772.1",
"protein_id": "ENSP00000627831.1",
"transcript_support_level": null,
"aa_start": 311,
"aa_end": null,
"aa_length": 588,
"cds_start": 932,
"cds_end": null,
"cds_length": 1767,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000957772.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu",
"transcript": "ENST00000861446.1",
"protein_id": "ENSP00000531505.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 570,
"cds_start": 1097,
"cds_end": null,
"cds_length": 1713,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861446.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.812G>T",
"hgvs_p": "p.Arg271Leu",
"transcript": "NM_001323511.2",
"protein_id": "NP_001310440.1",
"transcript_support_level": null,
"aa_start": 271,
"aa_end": null,
"aa_length": 548,
"cds_start": 812,
"cds_end": null,
"cds_length": 1647,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001323511.2"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.779G>T",
"hgvs_p": "p.Arg260Leu",
"transcript": "ENST00000861440.1",
"protein_id": "ENSP00000531499.1",
"transcript_support_level": null,
"aa_start": 260,
"aa_end": null,
"aa_length": 537,
"cds_start": 779,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861440.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.242G>T",
"hgvs_p": "p.Arg81Leu",
"transcript": "ENST00000567738.1",
"protein_id": "ENSP00000456288.1",
"transcript_support_level": 5,
"aa_start": 81,
"aa_end": null,
"aa_length": 287,
"cds_start": 242,
"cds_end": null,
"cds_length": 866,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000567738.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.812G>T",
"hgvs_p": "p.Arg271Leu",
"transcript": "XM_005255890.5",
"protein_id": "XP_005255947.1",
"transcript_support_level": null,
"aa_start": 271,
"aa_end": null,
"aa_length": 548,
"cds_start": 812,
"cds_end": null,
"cds_length": 1647,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005255890.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.245-3342G>T",
"hgvs_p": null,
"transcript": "ENST00000492830.5",
"protein_id": "ENSP00000473636.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 299,
"cds_start": null,
"cds_end": null,
"cds_length": 900,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000492830.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "c.256-20037G>T",
"hgvs_p": null,
"transcript": "ENST00000861445.1",
"protein_id": "ENSP00000531504.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 268,
"cds_start": null,
"cds_end": null,
"cds_length": 807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000861445.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"hgvs_c": "n.44-3342G>T",
"hgvs_p": null,
"transcript": "ENST00000568762.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000568762.1"
}
],
"gene_symbol": "AMFR",
"gene_hgnc_id": 463,
"dbsnp": "rs745966114",
"frequency_reference_population": 0.0000012407363,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 6.85008e-7,
"gnomad_genomes_af": 0.00000657428,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.6875025033950806,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.11999999731779099,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.4,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.8092,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.04,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 7.879,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0.12,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001323512.2",
"gene_symbol": "AMFR",
"hgnc_id": 463,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1097G>T",
"hgvs_p": "p.Arg366Leu"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}