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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-56464599-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=56464599&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 56464599,
"ref": "G",
"alt": "T",
"effect": "intron_variant",
"transcript": "NM_018233.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null,
"transcript": "NM_018233.4",
"protein_id": "NP_060703.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 542,
"cds_start": null,
"cds_end": null,
"cds_length": 1629,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000566157.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018233.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000566157.6",
"protein_id": "ENSP00000457258.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 542,
"cds_start": null,
"cds_end": null,
"cds_length": 1629,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_018233.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000566157.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ENSG00000288725",
"gene_hgnc_id": null,
"hgvs_c": "n.*1-16610C>A",
"hgvs_p": null,
"transcript": "ENST00000684388.1",
"protein_id": "ENSP00000507647.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000684388.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000924152.1",
"protein_id": "ENSP00000594211.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": null,
"cds_end": null,
"cds_length": 1662,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000924152.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.446-1553G>T",
"hgvs_p": null,
"transcript": "NM_001324357.2",
"protein_id": "NP_001311286.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 541,
"cds_start": null,
"cds_end": null,
"cds_length": 1626,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001324357.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.446-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000877350.1",
"protein_id": "ENSP00000547409.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 541,
"cds_start": null,
"cds_end": null,
"cds_length": 1626,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877350.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000966422.1",
"protein_id": "ENSP00000636481.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 540,
"cds_start": null,
"cds_end": null,
"cds_length": 1623,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000966422.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null,
"transcript": "NM_001324363.2",
"protein_id": "NP_001311292.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 504,
"cds_start": null,
"cds_end": null,
"cds_length": 1515,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001324363.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000877349.1",
"protein_id": "ENSP00000547408.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 504,
"cds_start": null,
"cds_end": null,
"cds_length": 1515,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877349.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000568397.1",
"protein_id": "ENSP00000457746.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 499,
"cds_start": null,
"cds_end": null,
"cds_length": 1500,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000568397.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.284-1553G>T",
"hgvs_p": null,
"transcript": "NM_001324358.2",
"protein_id": "NP_001311287.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"cds_length": 1464,
"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001324358.2"
},
{
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"canonical": false,
"protein_coding": true,
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"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 13,
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"gene_symbol": "OGFOD1",
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"hgvs_c": "c.284-1553G>T",
"hgvs_p": null,
"transcript": "NM_001324361.1",
"protein_id": "NP_001311290.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001324361.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 13,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.158-1553G>T",
"hgvs_p": null,
"transcript": "NM_001324359.1",
"protein_id": "NP_001311288.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"biotype": "protein_coding",
"feature": "NM_001324359.1"
},
{
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"protein_coding": true,
"strand": true,
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],
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"exon_count": 13,
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"gene_symbol": "OGFOD1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 13,
"intron_rank": 4,
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"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.29-1553G>T",
"hgvs_p": null,
"transcript": "NM_001324362.1",
"protein_id": "NP_001311291.1",
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001324362.1"
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 4,
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"gene_symbol": "OGFOD1",
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"hgvs_c": "c.284-1553G>T",
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"transcript": "ENST00000561646.5",
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},
{
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],
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"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.443-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000562150.5",
"protein_id": "ENSP00000456111.1",
"transcript_support_level": 4,
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"biotype": "protein_coding",
"feature": "ENST00000562150.5"
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "c.300+11191G>T",
"hgvs_p": null,
"transcript": "ENST00000924153.1",
"protein_id": "ENSP00000594212.1",
"transcript_support_level": null,
"aa_start": null,
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"biotype": "protein_coding",
"feature": "ENST00000924153.1"
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
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],
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"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "n.*136-1553G>T",
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},
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"strand": true,
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],
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"intron_rank": 2,
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"gene_symbol": "OGFOD1",
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"transcript": "ENST00000565209.1",
"protein_id": null,
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"biotype": "pseudogene",
"feature": "ENST00000565209.1"
},
{
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"strand": true,
"consequences": [
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],
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"intron_rank": 3,
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"gene_symbol": "OGFOD1",
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"hgvs_c": "n.421-1553G>T",
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"transcript": "ENST00000568172.1",
"protein_id": null,
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"biotype": "pseudogene",
"feature": "ENST00000568172.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"hgvs_c": "n.*244-1553G>T",
"hgvs_p": null,
"transcript": "ENST00000569802.5",
"protein_id": "ENSP00000455149.1",
"transcript_support_level": 4,
"aa_start": null,
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"aa_length": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000569802.5"
}
],
"gene_symbol": "OGFOD1",
"gene_hgnc_id": 25585,
"dbsnp": "rs4784670",
"frequency_reference_population": 0.6867198,
"hom_count_reference_population": 37684,
"allele_count_reference_population": 104299,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.68672,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 104299,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 37684,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9599999785423279,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.96,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.216,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "NM_018233.4",
"gene_symbol": "OGFOD1",
"hgnc_id": 25585,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.449-1553G>T",
"hgvs_p": null
},
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000684388.1",
"gene_symbol": "ENSG00000288725",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.*1-16610C>A",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}