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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-57656598-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=57656598&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "16",
      "pos": 57656598,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "ENST00000562631.7",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "NM_201525.4",
          "protein_id": "NP_958933.1",
          "transcript_support_level": null,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 687,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2064,
          "cdna_start": 1356,
          "cdna_end": null,
          "cdna_length": 4257,
          "mane_select": "ENST00000562631.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "ENST00000562631.7",
          "protein_id": "ENSP00000455351.2",
          "transcript_support_level": 1,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 687,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2064,
          "cdna_start": 1356,
          "cdna_end": null,
          "cdna_length": 4257,
          "mane_select": "NM_201525.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "ENST00000567835.5",
          "protein_id": "ENSP00000456794.1",
          "transcript_support_level": 1,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 693,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2082,
          "cdna_start": 1361,
          "cdna_end": null,
          "cdna_length": 3741,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "ENST00000388813.9",
          "protein_id": "ENSP00000373465.5",
          "transcript_support_level": 1,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 687,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2064,
          "cdna_start": 1575,
          "cdna_end": null,
          "cdna_length": 3925,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "ENST00000540164.6",
          "protein_id": "ENSP00000444911.2",
          "transcript_support_level": 1,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 687,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2064,
          "cdna_start": 1454,
          "cdna_end": null,
          "cdna_length": 3820,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "ENST00000568908.5",
          "protein_id": "ENSP00000457456.1",
          "transcript_support_level": 1,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 687,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2064,
          "cdna_start": 1496,
          "cdna_end": null,
          "cdna_length": 3852,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "NM_001145771.3",
          "protein_id": "NP_001139243.1",
          "transcript_support_level": null,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 693,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2082,
          "cdna_start": 1474,
          "cdna_end": null,
          "cdna_length": 4393,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "NM_001370428.1",
          "protein_id": "NP_001357357.1",
          "transcript_support_level": null,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 693,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2082,
          "cdna_start": 1445,
          "cdna_end": null,
          "cdna_length": 4364,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "NM_001370429.1",
          "protein_id": "NP_001357358.1",
          "transcript_support_level": null,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 693,
          "cds_start": 1148,
          "cds_end": null,
          "cds_length": 2082,
          "cdna_start": 1356,
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          "cdna_length": 4275,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
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        },
        {
          "aa_ref": "T",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG1",
          "gene_hgnc_id": 4512,
          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "NM_001370430.1",
          "protein_id": "NP_001357359.1",
          "transcript_support_level": null,
          "aa_start": 383,
          "aa_end": null,
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          "cds_start": 1148,
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          "cdna_start": 1327,
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        {
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          "strand": true,
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          "intron_rank": null,
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          "gene_symbol": "ADGRG1",
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          "hgvs_c": "c.1148C>T",
          "hgvs_p": "p.Thr383Ile",
          "transcript": "NM_001370431.1",
          "protein_id": "NP_001357360.1",
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        {
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          "exon_rank": 9,
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          "intron_rank": null,
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          "gene_symbol": "ADGRG1",
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        {
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          "hgvs_c": "c.1148C>T",
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        {
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          "gene_symbol": "ADGRG1",
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          "transcript": "ENST00000565976.6",
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        {
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        {
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          "gene_symbol": "ADGRG1",
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          "hgvs_c": "c.1163C>T",
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          "transcript": "ENST00000456916.5",
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        {
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          ],
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      "clinvar_submissions_summary": "US:1",
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}