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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-57759748-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=57759748&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 6,
          "criteria": [
            "BP4_Moderate",
            "BS2"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "KIFC3",
          "hgnc_id": 6326,
          "hgvs_c": "c.2522G>A",
          "hgvs_p": "p.Arg841Gln",
          "inheritance_mode": "AD",
          "pathogenic_score": 0,
          "score": -6,
          "transcript": "NM_001318710.2",
          "verdict": "Likely_benign"
        },
        {
          "benign_score": 2,
          "criteria": [
            "BP4_Moderate"
          ],
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "gene_symbol": "ENSG00000276166",
          "hgnc_id": null,
          "hgvs_c": "n.391C>T",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": -2,
          "transcript": "ENST00000613495.1",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Moderate,BS2",
      "acmg_score": -6,
      "allele_count_reference_population": 330,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.2799,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.13,
      "chr": "16",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.25395333766937256,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3359,
          "cdna_start": 2617,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "NM_001130100.2",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000445690.7",
          "protein_coding": true,
          "protein_id": "NP_001123572.1",
          "strand": false,
          "transcript": "NM_001130100.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3359,
          "cdna_start": 2617,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000445690.7",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001130100.2",
          "protein_coding": true,
          "protein_id": "ENSP00000401696.2",
          "strand": false,
          "transcript": "ENST00000445690.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 833,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3427,
          "cdna_start": 2714,
          "cds_end": null,
          "cds_length": 2502,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000379655.8",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000368976.4",
          "strand": false,
          "transcript": "ENST00000379655.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 687,
          "aa_ref": "R",
          "aa_start": 680,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3225,
          "cdna_start": 2483,
          "cds_end": null,
          "cds_length": 2064,
          "cds_start": 2039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000465878.6",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2039G>A",
          "hgvs_p": "p.Arg680Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000454659.1",
          "strand": false,
          "transcript": "ENST00000465878.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 687,
          "aa_ref": "R",
          "aa_start": 680,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3221,
          "cdna_start": 2982,
          "cds_end": null,
          "cds_length": 2064,
          "cds_start": 2039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 21,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000562903.5",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2039G>A",
          "hgvs_p": "p.Arg680Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000456239.1",
          "strand": false,
          "transcript": "ENST00000562903.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 915,
          "aa_ref": "R",
          "aa_start": 908,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3562,
          "cdna_start": 2824,
          "cds_end": null,
          "cds_length": 2748,
          "cds_start": 2723,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 22,
          "exon_rank": 20,
          "exon_rank_end": null,
          "feature": "ENST00000950450.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2723G>A",
          "hgvs_p": "p.Arg908Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000620509.1",
          "strand": false,
          "transcript": "ENST00000950450.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 905,
          "aa_ref": "R",
          "aa_start": 898,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3030,
          "cdna_start": 2807,
          "cds_end": null,
          "cds_length": 2718,
          "cds_start": 2693,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 21,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000950452.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2693G>A",
          "hgvs_p": "p.Arg898Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000620511.1",
          "strand": false,
          "transcript": "ENST00000950452.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "R",
          "aa_start": 888,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3512,
          "cdna_start": 2771,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2663,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 21,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000874184.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2663G>A",
          "hgvs_p": "p.Arg888Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000544243.1",
          "strand": false,
          "transcript": "ENST00000874184.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "R",
          "aa_start": 888,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3592,
          "cdna_start": 2856,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2663,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 21,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000950445.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2663G>A",
          "hgvs_p": "p.Arg888Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000620504.1",
          "strand": false,
          "transcript": "ENST00000950445.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 848,
          "aa_ref": "R",
          "aa_start": 841,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3505,
          "cdna_start": 2763,
          "cds_end": null,
          "cds_length": 2547,
          "cds_start": 2522,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "NM_001318710.2",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2522G>A",
          "hgvs_p": "p.Arg841Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001305639.1",
          "strand": false,
          "transcript": "NM_001318710.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 848,
          "aa_ref": "R",
          "aa_start": 841,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3047,
          "cdna_start": 2533,
          "cds_end": null,
          "cds_length": 2547,
          "cds_start": 2522,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000541240.5",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2522G>A",
          "hgvs_p": "p.Arg841Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000442008.1",
          "strand": false,
          "transcript": "ENST00000541240.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 833,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3330,
          "cdna_start": 2617,
          "cds_end": null,
          "cds_length": 2502,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "NM_005550.4",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_005541.3",
          "strand": false,
          "transcript": "NM_005550.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3366,
          "cdna_start": 2625,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000874177.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000544236.1",
          "strand": false,
          "transcript": "ENST00000874177.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3413,
          "cdna_start": 2673,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 21,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000874178.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000544237.1",
          "strand": false,
          "transcript": "ENST00000874178.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3484,
          "cdna_start": 2742,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000874179.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000544238.1",
          "strand": false,
          "transcript": "ENST00000874179.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3547,
          "cdna_start": 2805,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000874180.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000544239.1",
          "strand": false,
          "transcript": "ENST00000874180.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3534,
          "cdna_start": 2577,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000874183.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000544242.1",
          "strand": false,
          "transcript": "ENST00000874183.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 826,
          "aa_ref": "R",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3291,
          "cdna_start": 2554,
          "cds_end": null,
          "cds_length": 2481,
          "cds_start": 2456,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000950449.1",
          "gene_hgnc_id": 6326,
          "gene_symbol": "KIFC3",
          "hgvs_c": "c.2456G>A",
          "hgvs_p": "p.Arg819Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000620508.1",
          "strand": false,
          "transcript": "ENST00000950449.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 822,
          "aa_ref": "R",
          "aa_start": 815,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.