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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-58166713-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=58166713&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 18,
          "criteria": [
            "BP4_Moderate",
            "BP6_Very_Strong",
            "BA1"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "CSNK2A2",
          "hgnc_id": 2459,
          "hgvs_c": "c.727-29T>G",
          "hgvs_p": null,
          "inheritance_mode": "AD",
          "pathogenic_score": 0,
          "score": -18,
          "transcript": "NM_001896.4",
          "verdict": "Benign"
        }
      ],
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Moderate,BP6_Very_Strong,BA1",
      "acmg_score": -18,
      "allele_count_reference_population": 122464,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "C",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.19,
      "chr": "16",
      "clinvar_classification": "Benign",
      "clinvar_disease": "not provided",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "B:2",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": -0.1899999976158142,
      "computational_source_selected": "BayesDel_noAF",
      "consequences": [
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 350,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1887,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1053,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 12,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001896.4",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.727-29T>G",
          "hgvs_p": null,
          "intron_rank": 8,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000262506.8",
          "protein_coding": true,
          "protein_id": "NP_001887.1",
          "strand": false,
          "transcript": "NM_001896.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 350,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1887,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1053,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 12,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000262506.8",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.727-29T>G",
          "hgvs_p": null,
          "intron_rank": 8,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001896.4",
          "protein_coding": true,
          "protein_id": "ENSP00000262506.3",
          "strand": false,
          "transcript": "ENST00000262506.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 363,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1695,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1092,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000952604.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.766-29T>G",
          "hgvs_p": null,
          "intron_rank": 9,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000622663.1",
          "strand": false,
          "transcript": "ENST00000952604.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 350,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6041,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1053,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931140.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.727-29T>G",
          "hgvs_p": null,
          "intron_rank": 8,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000601199.1",
          "strand": false,
          "transcript": "ENST00000931140.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 350,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1658,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1053,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 12,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931142.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.727-29T>G",
          "hgvs_p": null,
          "intron_rank": 8,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000601201.1",
          "strand": false,
          "transcript": "ENST00000931142.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 346,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1960,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1041,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 12,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931138.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.715-29T>G",
          "hgvs_p": null,
          "intron_rank": 8,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000601197.1",
          "strand": false,
          "transcript": "ENST00000931138.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 330,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1868,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 993,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931139.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.667-29T>G",
          "hgvs_p": null,
          "intron_rank": 7,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000601198.1",
          "strand": false,
          "transcript": "ENST00000931139.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 330,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5600,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 993,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931144.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.667-29T>G",
          "hgvs_p": null,
          "intron_rank": 7,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000601203.1",
          "strand": false,
          "transcript": "ENST00000931144.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 322,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5563,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 969,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931145.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.643-29T>G",
          "hgvs_p": null,
          "intron_rank": 7,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000601204.1",
          "strand": false,
          "transcript": "ENST00000931145.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 322,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1795,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 969,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000952600.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.643-29T>G",
          "hgvs_p": null,
          "intron_rank": 7,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000622659.1",
          "strand": false,
          "transcript": "ENST00000952600.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
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          "aa_length": 299,
          "aa_ref": null,
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1364,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 900,
          "cds_start": null,
          "consequences": [
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          ],
          "exon_count": 10,
          "exon_rank": null,
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          "feature": "ENST00000565188.2",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.574-29T>G",
          "hgvs_p": null,
          "intron_rank": 6,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000454874.2",
          "strand": false,
          "transcript": "ENST00000565188.2",
          "transcript_support_level": 2
        },
        {
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          "aa_length": 299,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5840,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 900,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931141.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.574-29T>G",
          "hgvs_p": null,
          "intron_rank": 6,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000601200.1",
          "strand": false,
          "transcript": "ENST00000931141.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 279,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5736,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 840,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 8,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000931143.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.514-29T>G",
          "hgvs_p": null,
          "intron_rank": 5,
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          "mane_plus": null,
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          "protein_coding": true,
          "protein_id": "ENSP00000601202.1",
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          "transcript": "ENST00000931143.1",
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        },
        {
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          "aa_ref": null,
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          "cdna_length": 1602,
          "cdna_start": null,
          "cds_end": null,
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          "consequences": [
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          ],
          "exon_count": 9,
          "exon_rank": null,
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          "feature": "ENST00000952603.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.514-29T>G",
          "hgvs_p": null,
          "intron_rank": 5,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000622662.1",
          "strand": false,
          "transcript": "ENST00000952603.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
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          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5017,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 816,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 8,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000867095.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.490-29T>G",
          "hgvs_p": null,
          "intron_rank": 5,
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          "mane_plus": null,
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          "protein_coding": true,
          "protein_id": "ENSP00000537154.1",
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          "transcript": "ENST00000867095.1",
          "transcript_support_level": null
        },
        {
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          "aa_ref": null,
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1638,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 816,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000952601.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.490-29T>G",
          "hgvs_p": null,
          "intron_rank": 5,
          "intron_rank_end": null,
          "mane_plus": null,
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          "protein_coding": true,
          "protein_id": "ENSP00000622660.1",
          "strand": false,
          "transcript": "ENST00000952601.1",
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        },
        {
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          "biotype": "protein_coding",
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          "cdna_end": null,
          "cdna_length": 1548,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 756,
          "cds_start": null,
          "consequences": [
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          ],
          "exon_count": 8,
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          "feature": "ENST00000952602.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.430-29T>G",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000622661.1",
          "strand": false,
          "transcript": "ENST00000952602.1",
          "transcript_support_level": null
        },
        {
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          "aa_length": 230,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
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          "cdna_end": null,
          "cdna_length": 947,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 693,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 8,
          "exon_rank": null,
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          "feature": "ENST00000567730.6",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.367-29T>G",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000456606.2",
          "strand": false,
          "transcript": "ENST00000567730.6",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 350,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7587,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1053,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_047433626.1",
          "gene_hgnc_id": 2459,
          "gene_symbol": "CSNK2A2",
          "hgvs_c": "c.727-29T>G",
          "hgvs_p": null,
          "intron_rank": 8,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047289582.1",
          "strand": false,
          "transcript": "XM_047433626.1",
          "transcript_support_level": null
        },
        {
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.