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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-67184970-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=67184970&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "EXOC3L1",
"hgnc_id": 27540,
"hgvs_c": "c.1837G>A",
"hgvs_p": "p.Glu613Lys",
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": 2,
"transcript": "NM_178516.4",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_score": 2,
"allele_count_reference_population": 6,
"alphamissense_prediction": null,
"alphamissense_score": 0.2565,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.37,
"chr": "16",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Uncertain_significance",
"computational_score_selected": 0.5930458903312683,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 746,
"aa_ref": "E",
"aa_start": 613,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2429,
"cdna_start": 2010,
"cds_end": null,
"cds_length": 2241,
"cds_start": 1837,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "NM_178516.4",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1837G>A",
"hgvs_p": "p.Glu613Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000314586.11",
"protein_coding": true,
"protein_id": "NP_848611.2",
"strand": false,
"transcript": "NM_178516.4",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 746,
"aa_ref": "E",
"aa_start": 613,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2429,
"cdna_start": 2010,
"cds_end": null,
"cds_length": 2241,
"cds_start": 1837,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000314586.11",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1837G>A",
"hgvs_p": "p.Glu613Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_178516.4",
"protein_coding": true,
"protein_id": "ENSP00000325674.6",
"strand": false,
"transcript": "ENST00000314586.11",
"transcript_support_level": 2
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 751,
"aa_ref": "E",
"aa_start": 618,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2550,
"cdna_start": 2131,
"cds_end": null,
"cds_length": 2256,
"cds_start": 1852,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000925360.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1852G>A",
"hgvs_p": "p.Glu618Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000595419.1",
"strand": false,
"transcript": "ENST00000925360.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 751,
"aa_ref": "E",
"aa_start": 618,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2620,
"cdna_start": 2204,
"cds_end": null,
"cds_length": 2256,
"cds_start": 1852,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000925362.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1852G>A",
"hgvs_p": "p.Glu618Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000595421.1",
"strand": false,
"transcript": "ENST00000925362.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 751,
"aa_ref": "E",
"aa_start": 618,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2460,
"cdna_start": 2043,
"cds_end": null,
"cds_length": 2256,
"cds_start": 1852,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000951007.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1852G>A",
"hgvs_p": "p.Glu618Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621066.1",
"strand": false,
"transcript": "ENST00000951007.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 746,
"aa_ref": "E",
"aa_start": 613,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2817,
"cdna_start": 2333,
"cds_end": null,
"cds_length": 2241,
"cds_start": 1837,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000855140.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1837G>A",
"hgvs_p": "p.Glu613Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000525199.1",
"strand": false,
"transcript": "ENST00000855140.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 746,
"aa_ref": "E",
"aa_start": 613,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2636,
"cdna_start": 2217,
"cds_end": null,
"cds_length": 2241,
"cds_start": 1837,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000855142.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1837G>A",
"hgvs_p": "p.Glu613Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000525201.1",
"strand": false,
"transcript": "ENST00000855142.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 746,
"aa_ref": "E",
"aa_start": 613,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2557,
"cdna_start": 2138,
"cds_end": null,
"cds_length": 2241,
"cds_start": 1837,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000925361.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1837G>A",
"hgvs_p": "p.Glu613Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000595420.1",
"strand": false,
"transcript": "ENST00000925361.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 709,
"aa_ref": "E",
"aa_start": 576,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2329,
"cdna_start": 1909,
"cds_end": null,
"cds_length": 2130,
"cds_start": 1726,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000951005.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1726G>A",
"hgvs_p": "p.Glu576Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621064.1",
"strand": false,
"transcript": "ENST00000951005.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 704,
"aa_ref": "E",
"aa_start": 571,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2658,
"cdna_start": 2240,
"cds_end": null,
"cds_length": 2115,
"cds_start": 1711,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000951004.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1711G>A",
"hgvs_p": "p.Glu571Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621063.1",
"strand": false,
"transcript": "ENST00000951004.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 704,
"aa_ref": "E",
"aa_start": 571,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2390,
"cdna_start": 1972,
"cds_end": null,
"cds_length": 2115,
"cds_start": 1711,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000951006.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1711G>A",
"hgvs_p": "p.Glu571Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621065.1",
"strand": false,
"transcript": "ENST00000951006.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 704,
"aa_ref": "E",
"aa_start": 571,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2419,
"cdna_start": 2002,
"cds_end": null,
"cds_length": 2115,
"cds_start": 1711,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000951008.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1711G>A",
"hgvs_p": "p.Glu571Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621067.1",
"strand": false,
"transcript": "ENST00000951008.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 685,
"aa_ref": "E",
"aa_start": 552,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2279,
"cdna_start": 1860,
"cds_end": null,
"cds_length": 2058,
"cds_start": 1654,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000855141.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1654G>A",
"hgvs_p": "p.Glu552Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000525200.1",
"strand": false,
"transcript": "ENST00000855141.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 683,
"aa_ref": "E",
"aa_start": 515,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2225,
"cdna_start": 1716,
"cds_end": null,
"cds_length": 2052,
"cds_start": 1543,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000563889.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1543G>A",
"hgvs_p": "p.Glu515Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000455223.1",
"strand": false,
"transcript": "ENST00000563889.1",
"transcript_support_level": 2
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 678,
"aa_ref": "E",
"aa_start": 510,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2247,
"cdna_start": 1737,
"cds_end": null,
"cds_length": 2038,
"cds_start": 1528,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000545725.6",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1528G>A",
"hgvs_p": "p.Glu510Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000439910.2",
"strand": false,
"transcript": "ENST00000545725.6",
"transcript_support_level": 2
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 643,
"aa_ref": "E",
"aa_start": 510,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2204,
"cdna_start": 1785,
"cds_end": null,
"cds_length": 1932,
"cds_start": 1528,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000855143.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1528G>A",
"hgvs_p": "p.Glu510Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000525202.1",
"strand": false,
"transcript": "ENST00000855143.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 563,
"aa_ref": "E",
"aa_start": 430,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1880,
"cdna_start": 1464,
"cds_end": null,
"cds_length": 1692,
"cds_start": 1288,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000855144.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1288G>A",
"hgvs_p": "p.Glu430Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000525203.1",
"strand": false,
"transcript": "ENST00000855144.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 694,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2255,
"cdna_start": null,
"cds_end": null,
"cds_length": 2085,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000951009.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "c.1750-160G>A",
"hgvs_p": null,
"intron_rank": 11,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621068.1",
"strand": false,
"transcript": "ENST00000951009.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "retained_intron",
"canonical": false,
"cdna_end": null,
"cdna_length": 807,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 4,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000563536.1",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "n.515G>A",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000563536.1",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1845,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000564324.5",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "n.*761G>A",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000456435.1",
"strand": false,
"transcript": "ENST00000564324.5",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1845,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"3_prime_UTR_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000564324.5",
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"hgvs_c": "n.*761G>A",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000456435.1",
"strand": false,
"transcript": "ENST00000564324.5",
"transcript_support_level": 2
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": "rs1461539219",
"effect": "missense_variant",
"frequency_reference_population": 0.0000041160392,
"gene_hgnc_id": 27540,
"gene_symbol": "EXOC3L1",
"gnomad_exomes_ac": 6,
"gnomad_exomes_af": 0.00000411604,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_ac": null,
"gnomad_genomes_af": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 0,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": "Uncertain significance",
"phenotype_combined": "not specified",
"phylop100way_prediction": "Benign",
"phylop100way_score": 2.704,
"pos": 67184970,
"ref": "C",
"revel_prediction": "Benign",
"revel_score": 0.164,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0,
"transcript": "NM_178516.4"
}
]
}