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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-67230081-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=67230081&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 67230081,
"ref": "T",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001318202.2",
"consequences": [
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3199A>T",
"hgvs_p": "p.Asn1067Tyr",
"transcript": "NM_013241.3",
"protein_id": "NP_037373.2",
"transcript_support_level": null,
"aa_start": 1067,
"aa_end": null,
"aa_length": 1164,
"cds_start": 3199,
"cds_end": null,
"cds_length": 3495,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000258201.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_013241.3"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3199A>T",
"hgvs_p": "p.Asn1067Tyr",
"transcript": "ENST00000258201.9",
"protein_id": "ENSP00000258201.4",
"transcript_support_level": 1,
"aa_start": 1067,
"aa_end": null,
"aa_length": 1164,
"cds_start": 3199,
"cds_end": null,
"cds_length": 3495,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_013241.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000258201.9"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3481A>T",
"hgvs_p": "p.Asn1161Tyr",
"transcript": "ENST00000932114.1",
"protein_id": "ENSP00000602173.1",
"transcript_support_level": null,
"aa_start": 1161,
"aa_end": null,
"aa_length": 1258,
"cds_start": 3481,
"cds_end": null,
"cds_length": 3777,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932114.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3469A>T",
"hgvs_p": "p.Asn1157Tyr",
"transcript": "ENST00000910037.1",
"protein_id": "ENSP00000580096.1",
"transcript_support_level": null,
"aa_start": 1157,
"aa_end": null,
"aa_length": 1254,
"cds_start": 3469,
"cds_end": null,
"cds_length": 3765,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910037.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3304A>T",
"hgvs_p": "p.Asn1102Tyr",
"transcript": "ENST00000910044.1",
"protein_id": "ENSP00000580103.1",
"transcript_support_level": null,
"aa_start": 1102,
"aa_end": null,
"aa_length": 1199,
"cds_start": 3304,
"cds_end": null,
"cds_length": 3600,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910044.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3277A>T",
"hgvs_p": "p.Asn1093Tyr",
"transcript": "NM_001318202.2",
"protein_id": "NP_001305131.1",
"transcript_support_level": null,
"aa_start": 1093,
"aa_end": null,
"aa_length": 1190,
"cds_start": 3277,
"cds_end": null,
"cds_length": 3573,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318202.2"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3277A>T",
"hgvs_p": "p.Asn1093Tyr",
"transcript": "ENST00000910041.1",
"protein_id": "ENSP00000580100.1",
"transcript_support_level": null,
"aa_start": 1093,
"aa_end": null,
"aa_length": 1190,
"cds_start": 3277,
"cds_end": null,
"cds_length": 3573,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910041.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3253A>T",
"hgvs_p": "p.Asn1085Tyr",
"transcript": "ENST00000910039.1",
"protein_id": "ENSP00000580098.1",
"transcript_support_level": null,
"aa_start": 1085,
"aa_end": null,
"aa_length": 1182,
"cds_start": 3253,
"cds_end": null,
"cds_length": 3549,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910039.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3277A>T",
"hgvs_p": "p.Asn1093Tyr",
"transcript": "ENST00000966997.1",
"protein_id": "ENSP00000637056.1",
"transcript_support_level": null,
"aa_start": 1093,
"aa_end": null,
"aa_length": 1178,
"cds_start": 3277,
"cds_end": null,
"cds_length": 3537,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000966997.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3226A>T",
"hgvs_p": "p.Asn1076Tyr",
"transcript": "ENST00000910040.1",
"protein_id": "ENSP00000580099.1",
"transcript_support_level": null,
"aa_start": 1076,
"aa_end": null,
"aa_length": 1173,
"cds_start": 3226,
"cds_end": null,
"cds_length": 3522,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910040.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3196A>T",
"hgvs_p": "p.Asn1066Tyr",
"transcript": "ENST00000932112.1",
"protein_id": "ENSP00000602171.1",
"transcript_support_level": null,
"aa_start": 1066,
"aa_end": null,
"aa_length": 1163,
"cds_start": 3196,
"cds_end": null,
"cds_length": 3492,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932112.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3169A>T",
"hgvs_p": "p.Asn1057Tyr",
"transcript": "ENST00000910045.1",
"protein_id": "ENSP00000580104.1",
"transcript_support_level": null,
"aa_start": 1057,
"aa_end": null,
"aa_length": 1154,
"cds_start": 3169,
"cds_end": null,
"cds_length": 3465,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910045.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3199A>T",
"hgvs_p": "p.Asn1067Tyr",
"transcript": "ENST00000910038.1",
"protein_id": "ENSP00000580097.1",
"transcript_support_level": null,
"aa_start": 1067,
"aa_end": null,
"aa_length": 1152,
"cds_start": 3199,
"cds_end": null,
"cds_length": 3459,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910038.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3091A>T",
"hgvs_p": "p.Asn1031Tyr",
"transcript": "ENST00000910036.1",
"protein_id": "ENSP00000580095.1",
"transcript_support_level": null,
"aa_start": 1031,
"aa_end": null,
"aa_length": 1128,
"cds_start": 3091,
"cds_end": null,
"cds_length": 3387,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910036.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3037A>T",
"hgvs_p": "p.Asn1013Tyr",
"transcript": "ENST00000910035.1",
"protein_id": "ENSP00000580094.1",
"transcript_support_level": null,
"aa_start": 1013,
"aa_end": null,
"aa_length": 1110,
"cds_start": 3037,
"cds_end": null,
"cds_length": 3333,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910035.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3016A>T",
"hgvs_p": "p.Asn1006Tyr",
"transcript": "ENST00000910042.1",
"protein_id": "ENSP00000580101.1",
"transcript_support_level": null,
"aa_start": 1006,
"aa_end": null,
"aa_length": 1103,
"cds_start": 3016,
"cds_end": null,
"cds_length": 3312,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910042.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.2884A>T",
"hgvs_p": "p.Asn962Tyr",
"transcript": "ENST00000910043.1",
"protein_id": "ENSP00000580102.1",
"transcript_support_level": null,
"aa_start": 962,
"aa_end": null,
"aa_length": 1059,
"cds_start": 2884,
"cds_end": null,
"cds_length": 3180,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910043.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.2830A>T",
"hgvs_p": "p.Asn944Tyr",
"transcript": "ENST00000966998.1",
"protein_id": "ENSP00000637057.1",
"transcript_support_level": null,
"aa_start": 944,
"aa_end": null,
"aa_length": 1041,
"cds_start": 2830,
"cds_end": null,
"cds_length": 3126,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000966998.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.2794A>T",
"hgvs_p": "p.Asn932Tyr",
"transcript": "ENST00000932113.1",
"protein_id": "ENSP00000602172.1",
"transcript_support_level": null,
"aa_start": 932,
"aa_end": null,
"aa_length": 1029,
"cds_start": 2794,
"cds_end": null,
"cds_length": 3090,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932113.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3247A>T",
"hgvs_p": "p.Asn1083Tyr",
"transcript": "XM_011523043.3",
"protein_id": "XP_011521345.1",
"transcript_support_level": null,
"aa_start": 1083,
"aa_end": null,
"aa_length": 1180,
"cds_start": 3247,
"cds_end": null,
"cds_length": 3543,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011523043.3"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3169A>T",
"hgvs_p": "p.Asn1057Tyr",
"transcript": "XM_047433999.1",
"protein_id": "XP_047289955.1",
"transcript_support_level": null,
"aa_start": 1057,
"aa_end": null,
"aa_length": 1154,
"cds_start": 3169,
"cds_end": null,
"cds_length": 3465,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433999.1"
},
{
"aa_ref": "N",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FHOD1",
"gene_hgnc_id": 17905,
"hgvs_c": "c.3115A>T",
"hgvs_p": "p.Asn1039Tyr",
"transcript": "XM_011523044.2",
"protein_id": "XP_011521346.1",
"transcript_support_level": null,
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{
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{
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{
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],
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{
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"biotype": "nonsense_mediated_decay",
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],
"gene_symbol": "FHOD1",
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"dbsnp": "rs1007067939",
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"hom_count_reference_population": 0,
"allele_count_reference_population": 13,
"gnomad_exomes_af": 0.00000342045,
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"gnomad_exomes_ac": 5,
"gnomad_genomes_ac": 8,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.020295798778533936,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.024,
"revel_prediction": "Benign",
"alphamissense_score": 0.077,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.66,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.458,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Strong",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_001318202.2",
"gene_symbol": "FHOD1",
"hgnc_id": 17905,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.3277A>T",
"hgvs_p": "p.Asn1093Tyr"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}