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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-67358124-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=67358124&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 67358124,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000329956.11",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.578-5466A>G",
"hgvs_p": null,
"transcript": "NM_018296.6",
"protein_id": "NP_060766.5",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 754,
"cds_start": -4,
"cds_end": null,
"cds_length": 2265,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2428,
"mane_select": "ENST00000329956.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.578-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000329956.11",
"protein_id": "ENSP00000329943.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 754,
"cds_start": -4,
"cds_end": null,
"cds_length": 2265,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2428,
"mane_select": "NM_018296.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.215-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000563189.5",
"protein_id": "ENSP00000455103.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 633,
"cds_start": -4,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2104,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "n.647-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000565019.6",
"protein_id": "ENSP00000464675.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1888,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "n.*70-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000567211.5",
"protein_id": "ENSP00000455211.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1539,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.215-5466A>G",
"hgvs_p": null,
"transcript": "NM_001161575.2",
"protein_id": "NP_001155047.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 633,
"cds_start": -4,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2121,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.215-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000435835.3",
"protein_id": "ENSP00000411122.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 529,
"cds_start": -4,
"cds_end": null,
"cds_length": 1590,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1765,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.74-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000569499.6",
"protein_id": "ENSP00000456814.2",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 82,
"cds_start": -4,
"cds_end": null,
"cds_length": 250,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 747,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.71-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000561948.1",
"protein_id": "ENSP00000456347.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 63,
"cds_start": -4,
"cds_end": null,
"cds_length": 193,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 210,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.74-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000568804.6",
"protein_id": "ENSP00000464367.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 28,
"cds_start": -4,
"cds_end": null,
"cds_length": 89,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 596,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "n.*70-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000561821.1",
"protein_id": "ENSP00000456517.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 2,
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"gene_symbol": "LRRC36",
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"hgvs_c": "n.215-4060A>G",
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"transcript": "ENST00000567723.5",
"protein_id": "ENSP00000455799.1",
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"feature": null
},
{
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"strand": true,
"consequences": [
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],
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"exon_count": 7,
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"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "n.214+7834A>G",
"hgvs_p": null,
"transcript": "ENST00000567823.5",
"protein_id": "ENSP00000456164.1",
"transcript_support_level": 3,
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},
{
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"strand": true,
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],
"exon_rank": null,
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"gene_symbol": "LRRC36",
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"hgvs_c": "n.215-5466A>G",
"hgvs_p": null,
"transcript": "ENST00000568010.5",
"protein_id": "ENSP00000455018.1",
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},
{
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],
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 2,
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"gene_symbol": "LRRC36",
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"hgvs_c": "n.*69+7834A>G",
"hgvs_p": null,
"transcript": "ENST00000569552.5",
"protein_id": "ENSP00000454309.1",
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},
{
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],
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"gene_symbol": "LRRC36",
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"transcript": "ENST00000570075.5",
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},
{
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],
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"intron_rank": 5,
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"gene_symbol": "LRRC36",
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"hgvs_c": "c.578-5466A>G",
"hgvs_p": null,
"transcript": "XM_017023400.3",
"protein_id": "XP_016878889.1",
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},
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],
"exon_rank": null,
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"intron_rank": 5,
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"gene_symbol": "LRRC36",
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"hgvs_c": "c.578-5466A>G",
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"transcript": "XM_005256025.3",
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},
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],
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},
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],
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"gene_symbol": "LRRC36",
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},
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"strand": true,
"consequences": [
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],
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"exon_count": 12,
"intron_rank": 5,
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"gene_symbol": "LRRC36",
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"hgvs_c": "c.578-5466A>G",
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"transcript": "XM_011523200.2",
"protein_id": "XP_011521502.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 12,
"intron_rank": 5,
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"gene_symbol": "LRRC36",
"gene_hgnc_id": 25615,
"hgvs_c": "c.578-5466A>G",
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"transcript": "XM_047434329.1",
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},
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}