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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-70255797-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=70255797&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "16",
      "pos": 70255797,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "ENST00000261772.13",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile",
          "transcript": "NM_001605.3",
          "protein_id": "NP_001596.2",
          "transcript_support_level": null,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 968,
          "cds_start": 2217,
          "cds_end": null,
          "cds_length": 2907,
          "cdna_start": 2324,
          "cdna_end": null,
          "cdna_length": 3437,
          "mane_select": "ENST00000261772.13",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile",
          "transcript": "ENST00000261772.13",
          "protein_id": "ENSP00000261772.8",
          "transcript_support_level": 1,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 968,
          "cds_start": 2217,
          "cds_end": null,
          "cds_length": 2907,
          "cdna_start": 2324,
          "cdna_end": null,
          "cdna_length": 3437,
          "mane_select": "NM_001605.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2032C>T",
          "hgvs_p": "p.Arg678Cys",
          "transcript": "XM_047433666.1",
          "protein_id": "XP_047289622.1",
          "transcript_support_level": null,
          "aa_start": 678,
          "aa_end": null,
          "aa_length": 734,
          "cds_start": 2032,
          "cds_end": null,
          "cds_length": 2205,
          "cdna_start": 2139,
          "cdna_end": null,
          "cdna_length": 2322,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile",
          "transcript": "ENST00000565361.3",
          "protein_id": "ENSP00000455360.3",
          "transcript_support_level": 5,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 999,
          "cds_start": 2217,
          "cds_end": null,
          "cds_length": 3000,
          "cdna_start": 2375,
          "cdna_end": null,
          "cdna_length": 3572,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile",
          "transcript": "ENST00000675853.1",
          "protein_id": "ENSP00000502367.1",
          "transcript_support_level": null,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 984,
          "cds_start": 2217,
          "cds_end": null,
          "cds_length": 2955,
          "cdna_start": 2375,
          "cdna_end": null,
          "cdna_length": 3527,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2244C>T",
          "hgvs_p": "p.Ile748Ile",
          "transcript": "ENST00000675045.1",
          "protein_id": "ENSP00000502014.1",
          "transcript_support_level": null,
          "aa_start": 748,
          "aa_end": null,
          "aa_length": 977,
          "cds_start": 2244,
          "cds_end": null,
          "cds_length": 2934,
          "cdna_start": 2402,
          "cdna_end": null,
          "cdna_length": 3508,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile",
          "transcript": "ENST00000674691.1",
          "protein_id": "ENSP00000502247.1",
          "transcript_support_level": null,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 968,
          "cds_start": 2217,
          "cds_end": null,
          "cds_length": 2907,
          "cdna_start": 2353,
          "cdna_end": null,
          "cdna_length": 3494,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile",
          "transcript": "ENST00000674963.1",
          "protein_id": "ENSP00000501924.1",
          "transcript_support_level": null,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 968,
          "cds_start": 2217,
          "cds_end": null,
          "cds_length": 2907,
          "cdna_start": 2289,
          "cdna_end": null,
          "cdna_length": 3717,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile",
          "transcript": "ENST00000675643.1",
          "protein_id": "ENSP00000502797.1",
          "transcript_support_level": null,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 968,
          "cds_start": 2217,
          "cds_end": null,
          "cds_length": 2907,
          "cdna_start": 2340,
          "cdna_end": null,
          "cdna_length": 3768,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2196C>T",
          "hgvs_p": "p.Ile732Ile",
          "transcript": "ENST00000674512.1",
          "protein_id": "ENSP00000501613.1",
          "transcript_support_level": null,
          "aa_start": 732,
          "aa_end": null,
          "aa_length": 961,
          "cds_start": 2196,
          "cds_end": null,
          "cds_length": 2886,
          "cdna_start": 2352,
          "cdna_end": null,
          "cdna_length": 3458,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2190C>T",
          "hgvs_p": "p.Ile730Ile",
          "transcript": "ENST00000675133.1",
          "protein_id": "ENSP00000502230.1",
          "transcript_support_level": null,
          "aa_start": 730,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 2190,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": 2346,
          "cdna_end": null,
          "cdna_length": 3452,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2133C>T",
          "hgvs_p": "p.Ile711Ile",
          "transcript": "ENST00000675953.1",
          "protein_id": "ENSP00000502321.1",
          "transcript_support_level": null,
          "aa_start": 711,
          "aa_end": null,
          "aa_length": 940,
          "cds_start": 2133,
          "cds_end": null,
          "cds_length": 2823,
          "cdna_start": 2281,
          "cdna_end": null,
          "cdna_length": 3389,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "c.2088C>T",
          "hgvs_p": "p.Ile696Ile",
          "transcript": "ENST00000675691.1",
          "protein_id": "ENSP00000502196.1",
          "transcript_support_level": null,
          "aa_start": 696,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": 2088,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": 2236,
          "cdna_end": null,
          "cdna_length": 3344,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.2190C>T",
          "hgvs_p": null,
          "transcript": "ENST00000564359.6",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2545,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.*2006C>T",
          "hgvs_p": null,
          "transcript": "ENST00000674652.1",
          "protein_id": "ENSP00000502620.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3987,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.*472C>T",
          "hgvs_p": null,
          "transcript": "ENST00000674768.1",
          "protein_id": "ENSP00000501679.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3627,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.*410C>T",
          "hgvs_p": null,
          "transcript": "ENST00000674811.1",
          "protein_id": "ENSP00000502055.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2656,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.2266C>T",
          "hgvs_p": null,
          "transcript": "ENST00000674848.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3699,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.4571C>T",
          "hgvs_p": null,
          "transcript": "ENST00000674962.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6004,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.2197C>T",
          "hgvs_p": null,
          "transcript": "ENST00000675035.1",
          "protein_id": "ENSP00000502712.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3461,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
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          "gene_symbol": "AARS1",
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": 15,
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          "gene_symbol": "AARS1",
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          "hgvs_c": "n.*1244C>T",
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          "transcript": "ENST00000676211.1",
          "protein_id": "ENSP00000502726.1",
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        },
        {
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          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 16,
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          "exon_count": 20,
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          "gene_symbol": "AARS1",
          "gene_hgnc_id": 20,
          "hgvs_c": "n.*569C>T",
          "hgvs_p": null,
          "transcript": "ENST00000676247.1",
          "protein_id": "ENSP00000502699.1",
          "transcript_support_level": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 3790,
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          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "AARS1",
      "gene_hgnc_id": 20,
      "dbsnp": "rs770980206",
      "frequency_reference_population": 0.0002249054,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 363,
      "gnomad_exomes_af": 0.000225744,
      "gnomad_genomes_af": 0.000216848,
      "gnomad_exomes_ac": 330,
      "gnomad_genomes_ac": 33,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.5,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.5,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.073,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -13,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7",
      "acmg_by_gene": [
        {
          "score": -13,
          "benign_score": 13,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000261772.13",
          "gene_symbol": "AARS1",
          "hgnc_id": 20,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD,AR,Unknown",
          "hgvs_c": "c.2217C>T",
          "hgvs_p": "p.Ile739Ile"
        }
      ],
      "clinvar_disease": "Charcot-Marie-Tooth disease axonal type 2N,Charcot-Marie-Tooth disease type 2,Inborn genetic diseases,not provided",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:5",
      "phenotype_combined": "not provided|Charcot-Marie-Tooth disease axonal type 2N|Inborn genetic diseases|Charcot-Marie-Tooth disease type 2",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}