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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-78099796-C-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=78099796&ref=C&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "16",
      "pos": 78099796,
      "ref": "C",
      "alt": "A",
      "effect": "stop_gained",
      "transcript": "NM_016373.4",
      "consequences": [
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "NM_016373.4",
          "protein_id": "NP_057457.1",
          "transcript_support_level": null,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 414,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 1245,
          "cdna_start": 143,
          "cdna_end": null,
          "cdna_length": 2241,
          "mane_select": "ENST00000566780.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000566780.6",
          "protein_id": "ENSP00000457230.1",
          "transcript_support_level": 1,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 414,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 1245,
          "cdna_start": 143,
          "cdna_end": null,
          "cdna_length": 2241,
          "mane_select": "NM_016373.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000408984.7",
          "protein_id": "ENSP00000386161.3",
          "transcript_support_level": 1,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 363,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 1092,
          "cdna_start": 103,
          "cdna_end": null,
          "cdna_length": 1227,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000402655.6",
          "protein_id": "ENSP00000384238.2",
          "transcript_support_level": 1,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 311,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 936,
          "cdna_start": 143,
          "cdna_end": null,
          "cdna_length": 1594,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000406884.6",
          "protein_id": "ENSP00000384495.2",
          "transcript_support_level": 1,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 234,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 705,
          "cdna_start": 143,
          "cdna_end": null,
          "cdna_length": 1701,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000355860.7",
          "protein_id": "ENSP00000348119.3",
          "transcript_support_level": 1,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 189,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 570,
          "cdna_start": 118,
          "cdna_end": null,
          "cdna_length": 710,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000627394.3",
          "protein_id": "ENSP00000485925.2",
          "transcript_support_level": 5,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 446,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 1341,
          "cdna_start": 397,
          "cdna_end": null,
          "cdna_length": 2331,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000539474.6",
          "protein_id": "ENSP00000445210.2",
          "transcript_support_level": 5,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 213,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 642,
          "cdna_start": 143,
          "cdna_end": null,
          "cdna_length": 1670,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "NM_130791.5",
          "protein_id": "NP_570607.1",
          "transcript_support_level": null,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 189,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 570,
          "cdna_start": 143,
          "cdna_end": null,
          "cdna_length": 737,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "Y",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 1,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "c.18C>A",
          "hgvs_p": "p.Tyr6*",
          "transcript": "ENST00000569818.1",
          "protein_id": "ENSP00000454485.1",
          "transcript_support_level": 6,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 36,
          "cds_start": 18,
          "cds_end": null,
          "cds_length": 111,
          "cdna_start": 122,
          "cdna_end": null,
          "cdna_length": 525,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.62C>A",
          "hgvs_p": null,
          "transcript": "ENST00000561846.5",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 769,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.141C>A",
          "hgvs_p": null,
          "transcript": "ENST00000562214.5",
          "protein_id": null,
          "transcript_support_level": 4,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 654,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.11C>A",
          "hgvs_p": null,
          "transcript": "ENST00000563358.5",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 724,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.63C>A",
          "hgvs_p": null,
          "transcript": "ENST00000565562.5",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 448,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.18C>A",
          "hgvs_p": null,
          "transcript": "ENST00000566662.5",
          "protein_id": "ENSP00000454331.1",
          "transcript_support_level": 4,
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          "aa_length": null,
          "cds_start": -4,
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          "cdna_length": 571,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.18C>A",
          "hgvs_p": null,
          "transcript": "ENST00000569332.5",
          "protein_id": "ENSP00000454788.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1856,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.345C>A",
          "hgvs_p": null,
          "transcript": "ENST00000682609.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 6142,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.345C>A",
          "hgvs_p": null,
          "transcript": "ENST00000683286.1",
          "protein_id": null,
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          "cdna_length": 4754,
          "mane_select": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.18C>A",
          "hgvs_p": null,
          "transcript": "ENST00000683929.1",
          "protein_id": "ENSP00000507689.1",
          "transcript_support_level": null,
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          "cds_start": -4,
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          "cdna_length": 2683,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.347C>A",
          "hgvs_p": null,
          "transcript": "ENST00000684070.1",
          "protein_id": null,
          "transcript_support_level": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2487,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WWOX",
          "gene_hgnc_id": 12799,
          "hgvs_c": "n.345C>A",
          "hgvs_p": null,
          "transcript": "ENST00000684381.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
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      ],
      "gene_symbol": "WWOX",
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      "computational_score_selected": 0.6600000262260437,
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      "computational_source_selected": "BayesDel_noAF",
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      "acmg_classification": "Pathogenic",
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      "acmg_by_gene": [
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          "verdict": "Pathogenic",
          "transcript": "NM_016373.4",
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          "inheritance_mode": "AR,AD",
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          "hgvs_p": "p.Tyr6*"
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}