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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-78099796-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=78099796&ref=C&alt=A&genome=hg38&allGenes=true"
API Response
json
{
"variants": [
{
"chr": "16",
"pos": 78099796,
"ref": "C",
"alt": "A",
"effect": "stop_gained",
"transcript": "NM_016373.4",
"consequences": [
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "NM_016373.4",
"protein_id": "NP_057457.1",
"transcript_support_level": null,
"aa_start": 6,
"aa_end": null,
"aa_length": 414,
"cds_start": 18,
"cds_end": null,
"cds_length": 1245,
"cdna_start": 143,
"cdna_end": null,
"cdna_length": 2241,
"mane_select": "ENST00000566780.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000566780.6",
"protein_id": "ENSP00000457230.1",
"transcript_support_level": 1,
"aa_start": 6,
"aa_end": null,
"aa_length": 414,
"cds_start": 18,
"cds_end": null,
"cds_length": 1245,
"cdna_start": 143,
"cdna_end": null,
"cdna_length": 2241,
"mane_select": "NM_016373.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000408984.7",
"protein_id": "ENSP00000386161.3",
"transcript_support_level": 1,
"aa_start": 6,
"aa_end": null,
"aa_length": 363,
"cds_start": 18,
"cds_end": null,
"cds_length": 1092,
"cdna_start": 103,
"cdna_end": null,
"cdna_length": 1227,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000402655.6",
"protein_id": "ENSP00000384238.2",
"transcript_support_level": 1,
"aa_start": 6,
"aa_end": null,
"aa_length": 311,
"cds_start": 18,
"cds_end": null,
"cds_length": 936,
"cdna_start": 143,
"cdna_end": null,
"cdna_length": 1594,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000406884.6",
"protein_id": "ENSP00000384495.2",
"transcript_support_level": 1,
"aa_start": 6,
"aa_end": null,
"aa_length": 234,
"cds_start": 18,
"cds_end": null,
"cds_length": 705,
"cdna_start": 143,
"cdna_end": null,
"cdna_length": 1701,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000355860.7",
"protein_id": "ENSP00000348119.3",
"transcript_support_level": 1,
"aa_start": 6,
"aa_end": null,
"aa_length": 189,
"cds_start": 18,
"cds_end": null,
"cds_length": 570,
"cdna_start": 118,
"cdna_end": null,
"cdna_length": 710,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000627394.3",
"protein_id": "ENSP00000485925.2",
"transcript_support_level": 5,
"aa_start": 6,
"aa_end": null,
"aa_length": 446,
"cds_start": 18,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 397,
"cdna_end": null,
"cdna_length": 2331,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000539474.6",
"protein_id": "ENSP00000445210.2",
"transcript_support_level": 5,
"aa_start": 6,
"aa_end": null,
"aa_length": 213,
"cds_start": 18,
"cds_end": null,
"cds_length": 642,
"cdna_start": 143,
"cdna_end": null,
"cdna_length": 1670,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "NM_130791.5",
"protein_id": "NP_570607.1",
"transcript_support_level": null,
"aa_start": 6,
"aa_end": null,
"aa_length": 189,
"cds_start": 18,
"cds_end": null,
"cds_length": 570,
"cdna_start": 143,
"cdna_end": null,
"cdna_length": 737,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Y",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 1,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*",
"transcript": "ENST00000569818.1",
"protein_id": "ENSP00000454485.1",
"transcript_support_level": 6,
"aa_start": 6,
"aa_end": null,
"aa_length": 36,
"cds_start": 18,
"cds_end": null,
"cds_length": 111,
"cdna_start": 122,
"cdna_end": null,
"cdna_length": 525,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.62C>A",
"hgvs_p": null,
"transcript": "ENST00000561846.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 769,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.141C>A",
"hgvs_p": null,
"transcript": "ENST00000562214.5",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 654,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.11C>A",
"hgvs_p": null,
"transcript": "ENST00000563358.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 724,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.63C>A",
"hgvs_p": null,
"transcript": "ENST00000565562.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 448,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.18C>A",
"hgvs_p": null,
"transcript": "ENST00000566662.5",
"protein_id": "ENSP00000454331.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 571,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.18C>A",
"hgvs_p": null,
"transcript": "ENST00000569332.5",
"protein_id": "ENSP00000454788.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1856,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.345C>A",
"hgvs_p": null,
"transcript": "ENST00000682609.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 6142,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.345C>A",
"hgvs_p": null,
"transcript": "ENST00000683286.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.18C>A",
"hgvs_p": null,
"transcript": "ENST00000683929.1",
"protein_id": "ENSP00000507689.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": 2683,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.347C>A",
"hgvs_p": null,
"transcript": "ENST00000684070.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.345C>A",
"hgvs_p": null,
"transcript": "ENST00000684381.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
"cdna_end": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.345C>A",
"hgvs_p": null,
"transcript": "ENST00000684452.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4093,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.397C>A",
"hgvs_p": null,
"transcript": "ENST00000684632.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1790,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
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},
{
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},
{
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}
],
"gene_symbol": "WWOX",
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"allele_count_reference_population": 0,
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"computational_score_selected": 0.6600000262260437,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
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"alphamissense_score": null,
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"bayesdelnoaf_score": 0.66,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 2.746,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"acmg_classification": "Pathogenic",
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"acmg_by_gene": [
{
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"criteria": [
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"PM2"
],
"verdict": "Pathogenic",
"transcript": "NM_016373.4",
"gene_symbol": "WWOX",
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"effects": [
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],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.18C>A",
"hgvs_p": "p.Tyr6*"
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],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}