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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-78115039-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=78115039&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 78115039,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000566780.6",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "NM_016373.4",
"protein_id": "NP_057457.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 414,
"cds_start": 294,
"cds_end": null,
"cds_length": 1245,
"cdna_start": 419,
"cdna_end": null,
"cdna_length": 2241,
"mane_select": "ENST00000566780.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "ENST00000566780.6",
"protein_id": "ENSP00000457230.1",
"transcript_support_level": 1,
"aa_start": 98,
"aa_end": null,
"aa_length": 414,
"cds_start": 294,
"cds_end": null,
"cds_length": 1245,
"cdna_start": 419,
"cdna_end": null,
"cdna_length": 2241,
"mane_select": "NM_016373.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "ENST00000408984.7",
"protein_id": "ENSP00000386161.3",
"transcript_support_level": 1,
"aa_start": 98,
"aa_end": null,
"aa_length": 363,
"cds_start": 294,
"cds_end": null,
"cds_length": 1092,
"cdna_start": 379,
"cdna_end": null,
"cdna_length": 1227,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "ENST00000402655.6",
"protein_id": "ENSP00000384238.2",
"transcript_support_level": 1,
"aa_start": 98,
"aa_end": null,
"aa_length": 311,
"cds_start": 294,
"cds_end": null,
"cds_length": 936,
"cdna_start": 419,
"cdna_end": null,
"cdna_length": 1594,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "ENST00000406884.6",
"protein_id": "ENSP00000384495.2",
"transcript_support_level": 1,
"aa_start": 98,
"aa_end": null,
"aa_length": 234,
"cds_start": 294,
"cds_end": null,
"cds_length": 705,
"cdna_start": 419,
"cdna_end": null,
"cdna_length": 1701,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "ENST00000355860.7",
"protein_id": "ENSP00000348119.3",
"transcript_support_level": 1,
"aa_start": 98,
"aa_end": null,
"aa_length": 189,
"cds_start": 294,
"cds_end": null,
"cds_length": 570,
"cdna_start": 394,
"cdna_end": null,
"cdna_length": 710,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "ENST00000627394.3",
"protein_id": "ENSP00000485925.2",
"transcript_support_level": 5,
"aa_start": 98,
"aa_end": null,
"aa_length": 446,
"cds_start": 294,
"cds_end": null,
"cds_length": 1341,
"cdna_start": 673,
"cdna_end": null,
"cdna_length": 2331,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "ENST00000539474.6",
"protein_id": "ENSP00000445210.2",
"transcript_support_level": 5,
"aa_start": 98,
"aa_end": null,
"aa_length": 213,
"cds_start": 294,
"cds_end": null,
"cds_length": 642,
"cdna_start": 419,
"cdna_end": null,
"cdna_length": 1670,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro",
"transcript": "NM_130791.5",
"protein_id": "NP_570607.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 189,
"cds_start": 294,
"cds_end": null,
"cds_length": 570,
"cdna_start": 419,
"cdna_end": null,
"cdna_length": 737,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.338G>A",
"hgvs_p": null,
"transcript": "ENST00000561846.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 769,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.417G>A",
"hgvs_p": null,
"transcript": "ENST00000562214.5",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 654,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.401G>A",
"hgvs_p": null,
"transcript": "ENST00000563358.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 724,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.*91G>A",
"hgvs_p": null,
"transcript": "ENST00000569332.5",
"protein_id": "ENSP00000454788.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 1856,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.621G>A",
"hgvs_p": null,
"transcript": "ENST00000682609.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 6142,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.621G>A",
"hgvs_p": null,
"transcript": "ENST00000683286.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.294G>A",
"hgvs_p": null,
"transcript": "ENST00000683929.1",
"protein_id": "ENSP00000507689.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 2683,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.558G>A",
"hgvs_p": null,
"transcript": "ENST00000684070.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 2487,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.621G>A",
"hgvs_p": null,
"transcript": "ENST00000684381.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": 2447,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.621G>A",
"hgvs_p": null,
"transcript": "ENST00000684452.1",
"protein_id": null,
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"mane_select": null,
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"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.673G>A",
"hgvs_p": null,
"transcript": "ENST00000684632.1",
"protein_id": null,
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"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.533G>A",
"hgvs_p": null,
"transcript": "NR_120436.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "c.-46G>A",
"hgvs_p": null,
"transcript": "NM_001291997.2",
"protein_id": "NP_001278926.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 301,
"cds_start": -4,
"cds_end": null,
"cds_length": 906,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2176,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.*91G>A",
"hgvs_p": null,
"transcript": "ENST00000569332.5",
"protein_id": "ENSP00000454788.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1856,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"hgvs_c": "n.*27+5204G>A",
"hgvs_p": null,
"transcript": "ENST00000566662.5",
"protein_id": "ENSP00000454331.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 571,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "WWOX",
"gene_hgnc_id": 12799,
"dbsnp": "rs200208343",
"frequency_reference_population": 0.000002736214,
"hom_count_reference_population": 0,
"allele_count_reference_population": 4,
"gnomad_exomes_af": 0.00000273621,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 4,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9100000262260437,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.91,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.842,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -5,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP6_Moderate,BP7",
"acmg_by_gene": [
{
"score": -5,
"benign_score": 7,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP6_Moderate",
"BP7"
],
"verdict": "Likely_benign",
"transcript": "ENST00000566780.6",
"gene_symbol": "WWOX",
"hgnc_id": 12799,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.294G>A",
"hgvs_p": "p.Pro98Pro"
}
],
"clinvar_disease": " 1,Autosomal recessive spinocerebellar ataxia 12,Developmental and epileptic encephalopathy",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "Developmental and epileptic encephalopathy, 1;Autosomal recessive spinocerebellar ataxia 12",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}