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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-89196015-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=89196015&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 89196015,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_001384763.1",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1325C>A",
"hgvs_p": "p.Thr442Asn",
"transcript": "NM_001384763.1",
"protein_id": "NP_001371692.1",
"transcript_support_level": null,
"aa_start": 442,
"aa_end": null,
"aa_length": 446,
"cds_start": 1325,
"cds_end": null,
"cds_length": 1341,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000682282.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384763.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1325C>A",
"hgvs_p": "p.Thr442Asn",
"transcript": "ENST00000682282.1",
"protein_id": "ENSP00000508250.1",
"transcript_support_level": null,
"aa_start": 442,
"aa_end": null,
"aa_length": 446,
"cds_start": 1325,
"cds_end": null,
"cds_length": 1341,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001384763.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000682282.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1271C>A",
"hgvs_p": "p.Thr424Asn",
"transcript": "NM_001366322.1",
"protein_id": "NP_001353251.1",
"transcript_support_level": null,
"aa_start": 424,
"aa_end": null,
"aa_length": 428,
"cds_start": 1271,
"cds_end": null,
"cds_length": 1287,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366322.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1124C>A",
"hgvs_p": "p.Thr375Asn",
"transcript": "NM_001384764.1",
"protein_id": "NP_001371693.1",
"transcript_support_level": null,
"aa_start": 375,
"aa_end": null,
"aa_length": 379,
"cds_start": 1124,
"cds_end": null,
"cds_length": 1140,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384764.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1001C>A",
"hgvs_p": "p.Thr334Asn",
"transcript": "NM_001384766.1",
"protein_id": "NP_001371695.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 338,
"cds_start": 1001,
"cds_end": null,
"cds_length": 1017,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384766.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1001C>A",
"hgvs_p": "p.Thr334Asn",
"transcript": "NM_001384767.1",
"protein_id": "NP_001371696.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 338,
"cds_start": 1001,
"cds_end": null,
"cds_length": 1017,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384767.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1001C>A",
"hgvs_p": "p.Thr334Asn",
"transcript": "NM_001384768.1",
"protein_id": "NP_001371697.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 338,
"cds_start": 1001,
"cds_end": null,
"cds_length": 1017,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384768.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1001C>A",
"hgvs_p": "p.Thr334Asn",
"transcript": "NM_001384769.1",
"protein_id": "NP_001371698.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 338,
"cds_start": 1001,
"cds_end": null,
"cds_length": 1017,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384769.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1001C>A",
"hgvs_p": "p.Thr334Asn",
"transcript": "ENST00000562855.7",
"protein_id": "ENSP00000474621.2",
"transcript_support_level": 5,
"aa_start": 334,
"aa_end": null,
"aa_length": 338,
"cds_start": 1001,
"cds_end": null,
"cds_length": 1017,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000562855.7"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1001C>A",
"hgvs_p": "p.Thr334Asn",
"transcript": "ENST00000614943.4",
"protein_id": "ENSP00000481421.1",
"transcript_support_level": 5,
"aa_start": 334,
"aa_end": null,
"aa_length": 338,
"cds_start": 1001,
"cds_end": null,
"cds_length": 1017,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000614943.4"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.919C>A",
"hgvs_p": "p.Pro307Thr",
"transcript": "NM_001384770.1",
"protein_id": "NP_001371699.1",
"transcript_support_level": null,
"aa_start": 307,
"aa_end": null,
"aa_length": 331,
"cds_start": 919,
"cds_end": null,
"cds_length": 996,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384770.1"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.844C>A",
"hgvs_p": "p.Pro282Thr",
"transcript": "NM_001384771.1",
"protein_id": "NP_001371700.1",
"transcript_support_level": null,
"aa_start": 282,
"aa_end": null,
"aa_length": 306,
"cds_start": 844,
"cds_end": null,
"cds_length": 921,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384771.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.719C>A",
"hgvs_p": "p.Thr240Asn",
"transcript": "NM_001384772.1",
"protein_id": "NP_001371701.1",
"transcript_support_level": null,
"aa_start": 240,
"aa_end": null,
"aa_length": 244,
"cds_start": 719,
"cds_end": null,
"cds_length": 735,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384772.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.719C>A",
"hgvs_p": "p.Thr240Asn",
"transcript": "NM_001384773.1",
"protein_id": "NP_001371702.1",
"transcript_support_level": null,
"aa_start": 240,
"aa_end": null,
"aa_length": 244,
"cds_start": 719,
"cds_end": null,
"cds_length": 735,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384773.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.719C>A",
"hgvs_p": "p.Thr240Asn",
"transcript": "NM_001384775.1",
"protein_id": "NP_001371704.1",
"transcript_support_level": null,
"aa_start": 240,
"aa_end": null,
"aa_length": 244,
"cds_start": 719,
"cds_end": null,
"cds_length": 735,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384775.1"
},
{
"aa_ref": "T",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1100C>A",
"hgvs_p": "p.Thr367Asn",
"transcript": "XM_017022962.2",
"protein_id": "XP_016878451.1",
"transcript_support_level": null,
"aa_start": 367,
"aa_end": null,
"aa_length": 371,
"cds_start": 1100,
"cds_end": null,
"cds_length": 1116,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022962.2"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.1018C>A",
"hgvs_p": "p.Pro340Thr",
"transcript": "XM_047433647.1",
"protein_id": "XP_047289603.1",
"transcript_support_level": null,
"aa_start": 340,
"aa_end": null,
"aa_length": 364,
"cds_start": 1018,
"cds_end": null,
"cds_length": 1095,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433647.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "c.*135C>A",
"hgvs_p": null,
"transcript": "NM_001384765.1",
"protein_id": "NP_001371694.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 348,
"cds_start": null,
"cds_end": null,
"cds_length": 1047,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001384765.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"hgvs_c": "n.*136C>A",
"hgvs_p": null,
"transcript": "ENST00000563595.6",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000563595.6"
}
],
"gene_symbol": "SLC22A31",
"gene_hgnc_id": 27091,
"dbsnp": "rs780900997",
"frequency_reference_population": 0.00015653277,
"hom_count_reference_population": 1,
"allele_count_reference_population": 237,
"gnomad_exomes_af": 0.000156418,
"gnomad_genomes_af": 0.000157557,
"gnomad_exomes_ac": 213,
"gnomad_genomes_ac": 24,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.006167024374008179,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": 0.0912,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.54,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.81,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Strong",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_001384763.1",
"gene_symbol": "SLC22A31",
"hgnc_id": 27091,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1325C>A",
"hgvs_p": "p.Thr442Asn"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}