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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-16029408-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=16029408&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 16029408,
"ref": "T",
"alt": "C",
"effect": "3_prime_UTR_variant",
"transcript": "NM_001439111.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 46,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_006311.4",
"protein_id": "NP_006302.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2440,
"cds_start": null,
"cds_end": null,
"cds_length": 7323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000268712.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006311.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 46,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "ENST00000268712.8",
"protein_id": "ENSP00000268712.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2440,
"cds_start": null,
"cds_end": null,
"cds_length": 7323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_006311.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000268712.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "ENST00000436068.2",
"protein_id": "ENSP00000389839.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2514,
"cds_start": null,
"cds_end": null,
"cds_length": 7545,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000436068.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_001439111.1",
"protein_id": "NP_001426040.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2514,
"cds_start": null,
"cds_end": null,
"cds_length": 7545,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001439111.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "ENST00000704744.1",
"protein_id": "ENSP00000516021.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2514,
"cds_start": null,
"cds_end": null,
"cds_length": 7545,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000704744.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 48,
"exon_rank_end": null,
"exon_count": 48,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_001439112.1",
"protein_id": "NP_001426041.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2466,
"cds_start": null,
"cds_end": null,
"cds_length": 7401,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001439112.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "ENST00000704745.1",
"protein_id": "ENSP00000516022.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2466,
"cds_start": null,
"cds_end": null,
"cds_length": 7401,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000704745.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_001439113.1",
"protein_id": "NP_001426042.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2464,
"cds_start": null,
"cds_end": null,
"cds_length": 7395,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001439113.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 46,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_001439114.1",
"protein_id": "NP_001426043.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2457,
"cds_start": null,
"cds_end": null,
"cds_length": 7374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001439114.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 46,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_001439115.1",
"protein_id": "NP_001426044.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2456,
"cds_start": null,
"cds_end": null,
"cds_length": 7371,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001439115.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 46,
"exon_rank_end": null,
"exon_count": 46,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_001439116.1",
"protein_id": "NP_001426045.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2441,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001439116.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 45,
"exon_rank_end": null,
"exon_count": 45,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "NM_001190440.2",
"protein_id": "NP_001177369.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 2337,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001190440.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 48,
"exon_rank_end": null,
"exon_count": 48,
"intron_rank": null,
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"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
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"transcript": "XM_005256866.6",
"protein_id": "XP_005256923.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
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},
{
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"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": null,
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"gene_symbol": "NCOR1",
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"biotype": "protein_coding",
"feature": "XM_006721601.5"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": null,
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"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "XM_017025396.3",
"protein_id": "XP_016880885.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017025396.3"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
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"intron_rank": null,
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"gene_symbol": "NCOR1",
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 48,
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"exon_count": 48,
"intron_rank": null,
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"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "XM_005256868.6",
"protein_id": "XP_005256925.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_005256868.6"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 49,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "XM_006721602.5",
"protein_id": "XP_006721665.1",
"transcript_support_level": null,
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},
{
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"strand": false,
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"3_prime_UTR_variant"
],
"exon_rank": 48,
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"exon_count": 48,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
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"hgvs_c": "c.*2888A>G",
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"feature": "XM_011524084.4"
},
{
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"protein_coding": true,
"strand": false,
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],
"exon_rank": 49,
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"intron_rank": null,
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"gene_symbol": "NCOR1",
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"hgvs_c": "c.*2888A>G",
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"transcript": "XM_017025400.3",
"protein_id": "XP_016880889.1",
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"feature": "XM_017025400.3"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
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"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "XM_017025401.3",
"protein_id": "XP_016880890.1",
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"aa_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017025401.3"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 47,
"exon_rank_end": null,
"exon_count": 47,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NCOR1",
"gene_hgnc_id": 7672,
"hgvs_c": "c.*2888A>G",
"hgvs_p": null,
"transcript": "XM_005256871.6",
"protein_id": "XP_005256928.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 2515,
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"cdna_start": null,
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"biotype": "protein_coding",
"feature": "XM_005256871.6"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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}
],
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}