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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-18100650-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=18100650&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "DRG2",
"hgnc_id": 3030,
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": 2,
"transcript": "NM_001388.5",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_score": 2,
"allele_count_reference_population": 71,
"alphamissense_prediction": null,
"alphamissense_score": 0.6066,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.12,
"chr": "17",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Uncertain_significance",
"computational_score_selected": 0.5535810589790344,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 364,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1900,
"cdna_start": 698,
"cds_end": null,
"cds_length": 1095,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_001388.5",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000225729.8",
"protein_coding": true,
"protein_id": "NP_001379.1",
"strand": true,
"transcript": "NM_001388.5",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 364,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 1900,
"cdna_start": 698,
"cds_end": null,
"cds_length": 1095,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000225729.8",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001388.5",
"protein_coding": true,
"protein_id": "ENSP00000225729.3",
"strand": true,
"transcript": "ENST00000225729.8",
"transcript_support_level": 1
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 378,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1803,
"cdna_start": 687,
"cds_end": null,
"cds_length": 1137,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000864168.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534227.1",
"strand": true,
"transcript": "ENST00000864168.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 378,
"aa_ref": "H",
"aa_start": 222,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1942,
"cdna_start": 740,
"cds_end": null,
"cds_length": 1137,
"cds_start": 664,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000968692.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.664C>T",
"hgvs_p": "p.His222Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000638751.1",
"strand": true,
"transcript": "ENST00000968692.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 376,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1325,
"cdna_start": 692,
"cds_end": null,
"cds_length": 1131,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000968693.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000638752.1",
"strand": true,
"transcript": "ENST00000968693.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 367,
"aa_ref": "H",
"aa_start": 211,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1911,
"cdna_start": 712,
"cds_end": null,
"cds_length": 1104,
"cds_start": 631,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000864162.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.631C>T",
"hgvs_p": "p.His211Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534221.1",
"strand": true,
"transcript": "ENST00000864162.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 362,
"aa_ref": "H",
"aa_start": 206,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1890,
"cdna_start": 687,
"cds_end": null,
"cds_length": 1089,
"cds_start": 616,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000864163.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.616C>T",
"hgvs_p": "p.His206Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534222.1",
"strand": true,
"transcript": "ENST00000864163.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 362,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1867,
"cdna_start": 670,
"cds_end": null,
"cds_length": 1089,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000864167.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534226.1",
"strand": true,
"transcript": "ENST00000864167.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 361,
"aa_ref": "H",
"aa_start": 205,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1877,
"cdna_start": 675,
"cds_end": null,
"cds_length": 1086,
"cds_start": 613,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000864165.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.613C>T",
"hgvs_p": "p.His205Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534224.1",
"strand": true,
"transcript": "ENST00000864165.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 356,
"aa_ref": "H",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1863,
"cdna_start": 663,
"cds_end": null,
"cds_length": 1071,
"cds_start": 598,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000864164.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.598C>T",
"hgvs_p": "p.His200Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534223.1",
"strand": true,
"transcript": "ENST00000864164.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 346,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1856,
"cdna_start": 698,
"cds_end": null,
"cds_length": 1041,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000864161.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534220.1",
"strand": true,
"transcript": "ENST00000864161.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 343,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1884,
"cdna_start": 698,
"cds_end": null,
"cds_length": 1032,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_001330144.2",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001317073.1",
"strand": true,
"transcript": "NM_001330144.2",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 343,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1897,
"cdna_start": 721,
"cds_end": null,
"cds_length": 1032,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000395726.8",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000379076.4",
"strand": true,
"transcript": "ENST00000395726.8",
"transcript_support_level": 5
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 339,
"aa_ref": "H",
"aa_start": 183,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1851,
"cdna_start": 647,
"cds_end": null,
"cds_length": 1020,
"cds_start": 547,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000925712.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.547C>T",
"hgvs_p": "p.His183Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000595771.1",
"strand": true,
"transcript": "ENST00000925712.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 334,
"aa_ref": "H",
"aa_start": 178,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1823,
"cdna_start": 619,
"cds_end": null,
"cds_length": 1005,
"cds_start": 532,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000864160.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.532C>T",
"hgvs_p": "p.His178Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534219.1",
"strand": true,
"transcript": "ENST00000864160.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 312,
"aa_ref": "H",
"aa_start": 156,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1717,
"cdna_start": 514,
"cds_end": null,
"cds_length": 939,
"cds_start": 466,
"consequences": [
"missense_variant"
],
"exon_count": 11,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000864166.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.466C>T",
"hgvs_p": "p.His156Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000534225.1",
"strand": true,
"transcript": "ENST00000864166.1",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 112,
"aa_ref": "H",
"aa_start": 103,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 389,
"cdna_start": 355,
"cds_end": null,
"cds_length": 341,
"cds_start": 307,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000580929.5",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.307C>T",
"hgvs_p": "p.His103Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000462060.1",
"strand": true,
"transcript": "ENST00000580929.5",
"transcript_support_level": 5
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 385,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1963,
"cdna_start": 698,
"cds_end": null,
"cds_length": 1158,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "XM_005256499.4",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_005256556.1",
"strand": true,
"transcript": "XM_005256499.4",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 364,
"aa_ref": "H",
"aa_start": 208,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1947,
"cdna_start": 698,
"cds_end": null,
"cds_length": 1095,
"cds_start": 622,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "XM_011523704.3",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.622C>T",
"hgvs_p": "p.His208Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_011522006.1",
"strand": true,
"transcript": "XM_011523704.3",
"transcript_support_level": null
},
{
"aa_alt": "Y",
"aa_end": null,
"aa_length": 304,
"aa_ref": "H",
"aa_start": 127,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1752,
"cdna_start": 487,
"cds_end": null,
"cds_length": 915,
"cds_start": 379,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "XM_005256500.3",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.379C>T",
"hgvs_p": "p.His127Tyr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_005256557.1",
"strand": true,
"transcript": "XM_005256500.3",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 165,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1292,
"cdna_start": null,
"cds_end": null,
"cds_length": 498,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 6,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000925714.1",
"gene_hgnc_id": 3030,
"gene_symbol": "DRG2",
"hgvs_c": "c.226-3151C>T",
"hgvs_p": null,
"intron_rank": 2,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000595773.1",
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