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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-18101548-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=18101548&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 5,
          "criteria": [
            "BP4_Moderate",
            "BP6_Moderate",
            "BP7"
          ],
          "effects": [
            "synonymous_variant"
          ],
          "gene_symbol": "DRG2",
          "hgnc_id": 3030,
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "inheritance_mode": "AR",
          "pathogenic_score": 0,
          "score": -5,
          "transcript": "NM_001388.5",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Moderate,BP6_Moderate,BP7",
      "acmg_score": -5,
      "allele_count_reference_population": 532,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.37,
      "chr": "17",
      "clinvar_classification": "Benign",
      "clinvar_disease": "not provided",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "B:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": -0.3700000047683716,
      "computational_source_selected": "BayesDel_noAF",
      "consequences": [
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 364,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1900,
          "cdna_start": 763,
          "cds_end": null,
          "cds_length": 1095,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "NM_001388.5",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000225729.8",
          "protein_coding": true,
          "protein_id": "NP_001379.1",
          "strand": true,
          "transcript": "NM_001388.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 364,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1900,
          "cdna_start": 763,
          "cds_end": null,
          "cds_length": 1095,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000225729.8",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001388.5",
          "protein_coding": true,
          "protein_id": "ENSP00000225729.3",
          "strand": true,
          "transcript": "ENST00000225729.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 362,
          "aa_ref": "R",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1867,
          "cdna_start": 733,
          "cds_end": null,
          "cds_length": 1089,
          "cds_start": 685,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000864167.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.685C>T",
          "hgvs_p": "p.Arg229*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534226.1",
          "strand": true,
          "transcript": "ENST00000864167.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 378,
          "aa_ref": "I",
          "aa_start": 243,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1803,
          "cdna_start": 794,
          "cds_end": null,
          "cds_length": 1137,
          "cds_start": 729,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000864168.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.729C>T",
          "hgvs_p": "p.Ile243Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534227.1",
          "strand": true,
          "transcript": "ENST00000864168.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 378,
          "aa_ref": "I",
          "aa_start": 243,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1942,
          "cdna_start": 805,
          "cds_end": null,
          "cds_length": 1137,
          "cds_start": 729,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 14,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000968692.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.729C>T",
          "hgvs_p": "p.Ile243Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000638751.1",
          "strand": true,
          "transcript": "ENST00000968692.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 376,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1325,
          "cdna_start": 757,
          "cds_end": null,
          "cds_length": 1131,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000968693.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000638752.1",
          "strand": true,
          "transcript": "ENST00000968693.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 367,
          "aa_ref": "I",
          "aa_start": 232,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1911,
          "cdna_start": 777,
          "cds_end": null,
          "cds_length": 1104,
          "cds_start": 696,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000864162.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.696C>T",
          "hgvs_p": "p.Ile232Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534221.1",
          "strand": true,
          "transcript": "ENST00000864162.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 362,
          "aa_ref": "I",
          "aa_start": 227,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1890,
          "cdna_start": 752,
          "cds_end": null,
          "cds_length": 1089,
          "cds_start": 681,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000864163.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.681C>T",
          "hgvs_p": "p.Ile227Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534222.1",
          "strand": true,
          "transcript": "ENST00000864163.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 361,
          "aa_ref": "I",
          "aa_start": 226,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1877,
          "cdna_start": 740,
          "cds_end": null,
          "cds_length": 1086,
          "cds_start": 678,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000864165.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.678C>T",
          "hgvs_p": "p.Ile226Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534224.1",
          "strand": true,
          "transcript": "ENST00000864165.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 356,
          "aa_ref": "I",
          "aa_start": 221,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1863,
          "cdna_start": 728,
          "cds_end": null,
          "cds_length": 1071,
          "cds_start": 663,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000864164.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.663C>T",
          "hgvs_p": "p.Ile221Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534223.1",
          "strand": true,
          "transcript": "ENST00000864164.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 346,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1856,
          "cdna_start": 763,
          "cds_end": null,
          "cds_length": 1041,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 12,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000864161.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534220.1",
          "strand": true,
          "transcript": "ENST00000864161.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 343,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1884,
          "cdna_start": 763,
          "cds_end": null,
          "cds_length": 1032,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "NM_001330144.2",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001317073.1",
          "strand": true,
          "transcript": "NM_001330144.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 343,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1897,
          "cdna_start": 786,
          "cds_end": null,
          "cds_length": 1032,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000395726.8",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000379076.4",
          "strand": true,
          "transcript": "ENST00000395726.8",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 339,
          "aa_ref": "I",
          "aa_start": 204,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1851,
          "cdna_start": 712,
          "cds_end": null,
          "cds_length": 1020,
          "cds_start": 612,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 12,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000925712.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.612C>T",
          "hgvs_p": "p.Ile204Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000595771.1",
          "strand": true,
          "transcript": "ENST00000925712.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 334,
          "aa_ref": "I",
          "aa_start": 199,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1823,
          "cdna_start": 684,
          "cds_end": null,
          "cds_length": 1005,
          "cds_start": 597,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 12,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000864160.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.597C>T",
          "hgvs_p": "p.Ile199Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534219.1",
          "strand": true,
          "transcript": "ENST00000864160.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 312,
          "aa_ref": "I",
          "aa_start": 177,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1717,
          "cdna_start": 579,
          "cds_end": null,
          "cds_length": 939,
          "cds_start": 531,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 11,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000864166.1",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.531C>T",
          "hgvs_p": "p.Ile177Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000534225.1",
          "strand": true,
          "transcript": "ENST00000864166.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 385,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1963,
          "cdna_start": 763,
          "cds_end": null,
          "cds_length": 1158,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "XM_005256499.4",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_005256556.1",
          "strand": true,
          "transcript": "XM_005256499.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 364,
          "aa_ref": "I",
          "aa_start": 229,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1947,
          "cdna_start": 763,
          "cds_end": null,
          "cds_length": 1095,
          "cds_start": 687,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 13,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "XM_011523704.3",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.687C>T",
          "hgvs_p": "p.Ile229Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_011522006.1",
          "strand": true,
          "transcript": "XM_011523704.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 304,
          "aa_ref": "I",
          "aa_start": 148,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1752,
          "cdna_start": 552,
          "cds_end": null,
          "cds_length": 915,
          "cds_start": 444,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 12,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "XM_005256500.3",
          "gene_hgnc_id": 3030,
          "gene_symbol": "DRG2",
          "hgvs_c": "c.444C>T",
          "hgvs_p": "p.Ile148Ile",
          "intron_rank": null,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.