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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-1853142-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=1853142&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 1853142,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_002945.5",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "NM_002945.5",
"protein_id": "NP_002936.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 616,
"cds_start": 314,
"cds_end": null,
"cds_length": 1851,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000254719.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_002945.5"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000254719.10",
"protein_id": "ENSP00000254719.4",
"transcript_support_level": 1,
"aa_start": 105,
"aa_end": null,
"aa_length": 616,
"cds_start": 314,
"cds_end": null,
"cds_length": 1851,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_002945.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000254719.10"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.455C>G",
"hgvs_p": "p.Ala152Gly",
"transcript": "ENST00000852058.1",
"protein_id": "ENSP00000522117.1",
"transcript_support_level": null,
"aa_start": 152,
"aa_end": null,
"aa_length": 663,
"cds_start": 455,
"cds_end": null,
"cds_length": 1992,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852058.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.407C>G",
"hgvs_p": "p.Ala136Gly",
"transcript": "ENST00000852055.1",
"protein_id": "ENSP00000522114.1",
"transcript_support_level": null,
"aa_start": 136,
"aa_end": null,
"aa_length": 647,
"cds_start": 407,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852055.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.383C>G",
"hgvs_p": "p.Ala128Gly",
"transcript": "ENST00000852057.1",
"protein_id": "ENSP00000522116.1",
"transcript_support_level": null,
"aa_start": 128,
"aa_end": null,
"aa_length": 639,
"cds_start": 383,
"cds_end": null,
"cds_length": 1920,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852057.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.455C>G",
"hgvs_p": "p.Ala152Gly",
"transcript": "ENST00000962481.1",
"protein_id": "ENSP00000632540.1",
"transcript_support_level": null,
"aa_start": 152,
"aa_end": null,
"aa_length": 632,
"cds_start": 455,
"cds_end": null,
"cds_length": 1899,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962481.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.326C>G",
"hgvs_p": "p.Ala109Gly",
"transcript": "ENST00000852060.1",
"protein_id": "ENSP00000522119.1",
"transcript_support_level": null,
"aa_start": 109,
"aa_end": null,
"aa_length": 620,
"cds_start": 326,
"cds_end": null,
"cds_length": 1863,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852060.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.311C>G",
"hgvs_p": "p.Ala104Gly",
"transcript": "ENST00000933416.1",
"protein_id": "ENSP00000603475.1",
"transcript_support_level": null,
"aa_start": 104,
"aa_end": null,
"aa_length": 615,
"cds_start": 311,
"cds_end": null,
"cds_length": 1848,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933416.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000852063.1",
"protein_id": "ENSP00000522122.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 614,
"cds_start": 314,
"cds_end": null,
"cds_length": 1845,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852063.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.302C>G",
"hgvs_p": "p.Ala101Gly",
"transcript": "ENST00000852064.1",
"protein_id": "ENSP00000522123.1",
"transcript_support_level": null,
"aa_start": 101,
"aa_end": null,
"aa_length": 612,
"cds_start": 302,
"cds_end": null,
"cds_length": 1839,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852064.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000933417.1",
"protein_id": "ENSP00000603476.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 606,
"cds_start": 314,
"cds_end": null,
"cds_length": 1821,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933417.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.275C>G",
"hgvs_p": "p.Ala92Gly",
"transcript": "NM_001355120.2",
"protein_id": "NP_001342049.1",
"transcript_support_level": null,
"aa_start": 92,
"aa_end": null,
"aa_length": 603,
"cds_start": 275,
"cds_end": null,
"cds_length": 1812,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001355120.2"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000933418.1",
"protein_id": "ENSP00000603477.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 600,
"cds_start": 314,
"cds_end": null,
"cds_length": 1803,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933418.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000852056.1",
"protein_id": "ENSP00000522115.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 585,
"cds_start": 314,
"cds_end": null,
"cds_length": 1758,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852056.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000852062.1",
"protein_id": "ENSP00000522121.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 580,
"cds_start": 314,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852062.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "NM_001355121.2",
"protein_id": "NP_001342050.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 557,
"cds_start": 314,
"cds_end": null,
"cds_length": 1674,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001355121.2"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000852061.1",
"protein_id": "ENSP00000522120.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 521,
"cds_start": 314,
"cds_end": null,
"cds_length": 1566,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852061.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly",
"transcript": "ENST00000933419.1",
"protein_id": "ENSP00000603478.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 463,
"cds_start": 314,
"cds_end": null,
"cds_length": 1392,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933419.1"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.275C>G",
"hgvs_p": "p.Ala92Gly",
"transcript": "ENST00000570451.5",
"protein_id": "ENSP00000459788.1",
"transcript_support_level": 3,
"aa_start": 92,
"aa_end": null,
"aa_length": 152,
"cds_start": 275,
"cds_end": null,
"cds_length": 460,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000570451.5"
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.275C>G",
"hgvs_p": "p.Ala92Gly",
"transcript": "ENST00000571058.5",
"protein_id": "ENSP00000461733.1",
"transcript_support_level": 4,
"aa_start": 92,
"aa_end": null,
"aa_length": 123,
"cds_start": 275,
"cds_end": null,
"cds_length": 372,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000571058.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.163+9144C>G",
"hgvs_p": null,
"transcript": "ENST00000933420.1",
"protein_id": "ENSP00000603479.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 411,
"cds_start": null,
"cds_end": null,
"cds_length": 1236,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933420.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "c.33+23016C>G",
"hgvs_p": null,
"transcript": "ENST00000852059.1",
"protein_id": "ENSP00000522118.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 397,
"cds_start": null,
"cds_end": null,
"cds_length": 1194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852059.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"hgvs_c": "n.230C>G",
"hgvs_p": null,
"transcript": "ENST00000571725.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000571725.1"
}
],
"gene_symbol": "RPA1",
"gene_hgnc_id": 10289,
"dbsnp": "rs775867881",
"frequency_reference_population": 0.000006195879,
"hom_count_reference_population": 0,
"allele_count_reference_population": 10,
"gnomad_exomes_af": 0.00000547253,
"gnomad_genomes_af": 0.0000131468,
"gnomad_exomes_ac": 8,
"gnomad_genomes_ac": 2,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.09539946913719177,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.095,
"revel_prediction": "Benign",
"alphamissense_score": 0.0936,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.53,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.663,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 2,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate"
],
"verdict": "Likely_benign",
"transcript": "NM_002945.5",
"gene_symbol": "RPA1",
"hgnc_id": 10289,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.314C>G",
"hgvs_p": "p.Ala105Gly"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}