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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-28616989-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=28616989&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PM2"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "BLTP2",
          "hgnc_id": 28960,
          "hgvs_c": "c.5921G>A",
          "hgvs_p": "p.Arg1974Gln",
          "inheritance_mode": "",
          "pathogenic_score": 2,
          "score": 2,
          "transcript": "NM_014680.5",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PM2"
          ],
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "gene_symbol": "SPAG5-AS1",
          "hgnc_id": 41140,
          "hgvs_c": "n.1755C>T",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 2,
          "score": 2,
          "transcript": "ENST00000414744.2",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_score": 2,
      "allele_count_reference_population": 5,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.1174,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.16,
      "chr": "17",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Uncertain_significance",
      "computational_score_selected": 0.6098943948745728,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2235,
          "aa_ref": "R",
          "aa_start": 1974,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7428,
          "cdna_start": 6023,
          "cds_end": null,
          "cds_length": 6708,
          "cds_start": 5921,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "NM_014680.5",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5921G>A",
          "hgvs_p": "p.Arg1974Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000528896.7",
          "protein_coding": true,
          "protein_id": "NP_055495.2",
          "strand": false,
          "transcript": "NM_014680.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2235,
          "aa_ref": "R",
          "aa_start": 1974,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 7428,
          "cdna_start": 6023,
          "cds_end": null,
          "cds_length": 6708,
          "cds_start": 5921,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "ENST00000528896.7",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5921G>A",
          "hgvs_p": "p.Arg1974Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_014680.5",
          "protein_coding": true,
          "protein_id": "ENSP00000436773.2",
          "strand": false,
          "transcript": "ENST00000528896.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2143,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000414744.2",
          "gene_hgnc_id": 41140,
          "gene_symbol": "SPAG5-AS1",
          "hgvs_c": "n.1755C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000414744.2",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2234,
          "aa_ref": "R",
          "aa_start": 1973,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7425,
          "cdna_start": 6020,
          "cds_end": null,
          "cds_length": 6705,
          "cds_start": 5918,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "NM_001321560.2",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5918G>A",
          "hgvs_p": "p.Arg1973Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001308489.1",
          "strand": false,
          "transcript": "NM_001321560.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2234,
          "aa_ref": "R",
          "aa_start": 1973,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7449,
          "cdna_start": 6038,
          "cds_end": null,
          "cds_length": 6705,
          "cds_start": 5918,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "ENST00000939120.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5918G>A",
          "hgvs_p": "p.Arg1973Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609179.1",
          "strand": false,
          "transcript": "ENST00000939120.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2234,
          "aa_ref": "R",
          "aa_start": 1973,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7423,
          "cdna_start": 6018,
          "cds_end": null,
          "cds_length": 6705,
          "cds_start": 5918,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "ENST00000939122.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5918G>A",
          "hgvs_p": "p.Arg1973Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609181.1",
          "strand": false,
          "transcript": "ENST00000939122.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2217,
          "aa_ref": "R",
          "aa_start": 1956,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7106,
          "cdna_start": 5966,
          "cds_end": null,
          "cds_length": 6654,
          "cds_start": 5867,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 38,
          "exon_rank": 33,
          "exon_rank_end": null,
          "feature": "ENST00000939124.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5867G>A",
          "hgvs_p": "p.Arg1956Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609183.1",
          "strand": false,
          "transcript": "ENST00000939124.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2196,
          "aa_ref": "R",
          "aa_start": 1935,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7329,
          "cdna_start": 5920,
          "cds_end": null,
          "cds_length": 6591,
          "cds_start": 5804,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "ENST00000902448.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5804G>A",
          "hgvs_p": "p.Arg1935Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000572507.1",
          "strand": false,
          "transcript": "ENST00000902448.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2184,
          "aa_ref": "R",
          "aa_start": 1923,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7231,
          "cdna_start": 5826,
          "cds_end": null,
          "cds_length": 6555,
          "cds_start": 5768,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "ENST00000939123.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5768G>A",
          "hgvs_p": "p.Arg1923Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609182.1",
          "strand": false,
          "transcript": "ENST00000939123.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2171,
          "aa_ref": "R",
          "aa_start": 1910,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7255,
          "cdna_start": 5844,
          "cds_end": null,
          "cds_length": 6516,
          "cds_start": 5729,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 38,
          "exon_rank": 33,
          "exon_rank_end": null,
          "feature": "ENST00000939121.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5729G>A",
          "hgvs_p": "p.Arg1910Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609180.1",
          "strand": false,
          "transcript": "ENST00000939121.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2169,
          "aa_ref": "R",
          "aa_start": 1908,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6959,
          "cdna_start": 5820,
          "cds_end": null,
          "cds_length": 6510,
          "cds_start": 5723,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "ENST00000955982.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5723G>A",
          "hgvs_p": "p.Arg1908Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000626041.1",
          "strand": false,
          "transcript": "ENST00000955982.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2092,
          "aa_ref": "R",
          "aa_start": 1831,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7287,
          "cdna_start": 5876,
          "cds_end": null,
          "cds_length": 6279,
          "cds_start": 5492,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 38,
          "exon_rank": 33,
          "exon_rank_end": null,
          "feature": "NM_001363826.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5492G>A",
          "hgvs_p": "p.Arg1831Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350755.1",
          "strand": false,
          "transcript": "NM_001363826.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 2092,
          "aa_ref": "R",
          "aa_start": 1831,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6852,
          "cdna_start": 5883,
          "cds_end": null,
          "cds_length": 6279,
          "cds_start": 5492,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 39,
          "exon_rank": 34,
          "exon_rank_end": null,
          "feature": "ENST00000389003.7",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.5492G>A",
          "hgvs_p": "p.Arg1831Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000467716.1",
          "strand": false,
          "transcript": "ENST00000389003.7",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 1900,
          "aa_ref": "R",
          "aa_start": 1639,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7301,
          "cdna_start": 5890,
          "cds_end": null,
          "cds_length": 5703,
          "cds_start": 4916,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 38,
          "exon_rank": 33,
          "exon_rank_end": null,
          "feature": "NM_001363827.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.4916G>A",
          "hgvs_p": "p.Arg1639Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350756.1",
          "strand": false,
          "transcript": "NM_001363827.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 1560,
          "aa_ref": "R",
          "aa_start": 1299,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7229,
          "cdna_start": 5818,
          "cds_end": null,
          "cds_length": 4683,
          "cds_start": 3896,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 38,
          "exon_rank": 33,
          "exon_rank_end": null,
          "feature": "NM_001363828.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.3896G>A",
          "hgvs_p": "p.Arg1299Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350757.1",
          "strand": false,
          "transcript": "NM_001363828.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 1559,
          "aa_ref": "R",
          "aa_start": 1298,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7662,
          "cdna_start": 6251,
          "cds_end": null,
          "cds_length": 4680,
          "cds_start": 3893,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 40,
          "exon_rank": 35,
          "exon_rank_end": null,
          "feature": "NM_001363829.1",
          "gene_hgnc_id": 28960,
          "gene_symbol": "BLTP2",
          "hgvs_c": "c.3893G>A",
          "hgvs_p": "p.Arg1298Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350758.1",
          "strand": false,
          "transcript": "NM_001363829.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1551,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000424210.1",
          "gene_hgnc_id": 41140,
          "gene_symbol": "SPAG5-AS1",
          "hgvs_c": "n.1165C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000424210.1",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1689,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 1,
          "exon_rank": 1,
          "exon_rank_end": null,
          "feature": "ENST00000584675.1",
          "gene_hgnc_id": 41140,
          "gene_symbol": "SPAG5-AS1",
          "hgvs_c": "n.1306C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000584675.1",
          "transcript_support_level": 6
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1422,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.