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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-2963919-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=2963919&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 2963919,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_001411048.1",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.343G>A",
          "hgvs_p": "p.Glu115Lys",
          "transcript": "NM_015085.5",
          "protein_id": "NP_055900.4",
          "transcript_support_level": null,
          "aa_start": 115,
          "aa_end": null,
          "aa_length": 730,
          "cds_start": 343,
          "cds_end": null,
          "cds_length": 2193,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000254695.13",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_015085.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.343G>A",
          "hgvs_p": "p.Glu115Lys",
          "transcript": "ENST00000254695.13",
          "protein_id": "ENSP00000254695.8",
          "transcript_support_level": 1,
          "aa_start": 115,
          "aa_end": null,
          "aa_length": 730,
          "cds_start": 343,
          "cds_end": null,
          "cds_length": 2193,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_015085.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000254695.13"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.298G>A",
          "hgvs_p": "p.Glu100Lys",
          "transcript": "ENST00000366401.8",
          "protein_id": "ENSP00000389824.2",
          "transcript_support_level": 1,
          "aa_start": 100,
          "aa_end": null,
          "aa_length": 715,
          "cds_start": 298,
          "cds_end": null,
          "cds_length": 2148,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000366401.8"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000262884",
          "gene_hgnc_id": 58549,
          "hgvs_c": "n.1511C>T",
          "hgvs_p": null,
          "transcript": "ENST00000574885.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000574885.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.466G>A",
          "hgvs_p": "p.Glu156Lys",
          "transcript": "NM_001411048.1",
          "protein_id": "NP_001397977.1",
          "transcript_support_level": null,
          "aa_start": 156,
          "aa_end": null,
          "aa_length": 771,
          "cds_start": 466,
          "cds_end": null,
          "cds_length": 2316,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001411048.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.466G>A",
          "hgvs_p": "p.Glu156Lys",
          "transcript": "ENST00000637138.1",
          "protein_id": "ENSP00000490321.1",
          "transcript_support_level": 5,
          "aa_start": 156,
          "aa_end": null,
          "aa_length": 771,
          "cds_start": 466,
          "cds_end": null,
          "cds_length": 2316,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000637138.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.421G>A",
          "hgvs_p": "p.Glu141Lys",
          "transcript": "NM_001438816.1",
          "protein_id": "NP_001425745.1",
          "transcript_support_level": null,
          "aa_start": 141,
          "aa_end": null,
          "aa_length": 756,
          "cds_start": 421,
          "cds_end": null,
          "cds_length": 2271,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001438816.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.370G>A",
          "hgvs_p": "p.Glu124Lys",
          "transcript": "NM_001411049.1",
          "protein_id": "NP_001397978.1",
          "transcript_support_level": null,
          "aa_start": 124,
          "aa_end": null,
          "aa_length": 739,
          "cds_start": 370,
          "cds_end": null,
          "cds_length": 2220,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001411049.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.370G>A",
          "hgvs_p": "p.Glu124Lys",
          "transcript": "ENST00000697391.1",
          "protein_id": "ENSP00000513294.1",
          "transcript_support_level": null,
          "aa_start": 124,
          "aa_end": null,
          "aa_length": 739,
          "cds_start": 370,
          "cds_end": null,
          "cds_length": 2220,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000697391.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.325G>A",
          "hgvs_p": "p.Glu109Lys",
          "transcript": "NM_001438817.1",
          "protein_id": "NP_001425746.1",
          "transcript_support_level": null,
          "aa_start": 109,
          "aa_end": null,
          "aa_length": 724,
          "cds_start": 325,
          "cds_end": null,
          "cds_length": 2175,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001438817.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.298G>A",
          "hgvs_p": "p.Glu100Lys",
          "transcript": "NM_001100398.2",
          "protein_id": "NP_001093868.1",
          "transcript_support_level": null,
          "aa_start": 100,
          "aa_end": null,
          "aa_length": 715,
          "cds_start": 298,
          "cds_end": null,
          "cds_length": 2148,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001100398.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.286G>A",
          "hgvs_p": "p.Glu96Lys",
          "transcript": "NM_001330058.2",
          "protein_id": "NP_001316987.1",
          "transcript_support_level": null,
          "aa_start": 96,
          "aa_end": null,
          "aa_length": 711,
          "cds_start": 286,
          "cds_end": null,
          "cds_length": 2136,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001330058.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.286G>A",
          "hgvs_p": "p.Glu96Lys",
          "transcript": "ENST00000540393.6",
          "protein_id": "ENSP00000439688.2",
          "transcript_support_level": 5,
          "aa_start": 96,
          "aa_end": null,
          "aa_length": 711,
          "cds_start": 286,
          "cds_end": null,
          "cds_length": 2136,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000540393.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.241G>A",
          "hgvs_p": "p.Glu81Lys",
          "transcript": "NM_001438818.1",
          "protein_id": "NP_001425747.1",
          "transcript_support_level": null,
          "aa_start": 81,
          "aa_end": null,
          "aa_length": 696,
          "cds_start": 241,
          "cds_end": null,
          "cds_length": 2091,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001438818.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.202G>A",
          "hgvs_p": "p.Glu68Lys",
          "transcript": "ENST00000697392.1",
          "protein_id": "ENSP00000513295.1",
          "transcript_support_level": null,
          "aa_start": 68,
          "aa_end": null,
          "aa_length": 683,
          "cds_start": 202,
          "cds_end": null,
          "cds_length": 2052,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000697392.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.157G>A",
          "hgvs_p": "p.Glu53Lys",
          "transcript": "NM_001437988.1",
          "protein_id": "NP_001424917.1",
          "transcript_support_level": null,
          "aa_start": 53,
          "aa_end": null,
          "aa_length": 668,
          "cds_start": 157,
          "cds_end": null,
          "cds_length": 2007,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001437988.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.262G>A",
          "hgvs_p": "p.Glu88Lys",
          "transcript": "ENST00000905763.1",
          "protein_id": "ENSP00000575822.1",
          "transcript_support_level": null,
          "aa_start": 88,
          "aa_end": null,
          "aa_length": 650,
          "cds_start": 262,
          "cds_end": null,
          "cds_length": 1953,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000905763.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.316G>A",
          "hgvs_p": "p.Glu106Lys",
          "transcript": "XM_017024371.2",
          "protein_id": "XP_016879860.1",
          "transcript_support_level": null,
          "aa_start": 106,
          "aa_end": null,
          "aa_length": 721,
          "cds_start": 316,
          "cds_end": null,
          "cds_length": 2166,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017024371.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.286G>A",
          "hgvs_p": "p.Glu96Lys",
          "transcript": "XM_011523741.3",
          "protein_id": "XP_011522043.1",
          "transcript_support_level": null,
          "aa_start": 96,
          "aa_end": null,
          "aa_length": 711,
          "cds_start": 286,
          "cds_end": null,
          "cds_length": 2136,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011523741.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.286G>A",
          "hgvs_p": "p.Glu96Lys",
          "transcript": "XM_047435668.1",
          "protein_id": "XP_047291624.1",
          "transcript_support_level": null,
          "aa_start": 96,
          "aa_end": null,
          "aa_length": 711,
          "cds_start": 286,
          "cds_end": null,
          "cds_length": 2136,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047435668.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.202G>A",
          "hgvs_p": "p.Glu68Lys",
          "transcript": "XM_011523743.2",
          "protein_id": "XP_011522045.1",
          "transcript_support_level": null,
          "aa_start": 68,
          "aa_end": null,
          "aa_length": 683,
          "cds_start": 202,
          "cds_end": null,
          "cds_length": 2052,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011523743.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2",
          "gene_hgnc_id": 29176,
          "hgvs_c": "c.466G>A",
          "hgvs_p": "p.Glu156Lys",
          "transcript": "XM_024450659.2",
          "protein_id": "XP_024306427.1",
          "transcript_support_level": null,
          "aa_start": 156,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 466,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_024450659.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RAP1GAP2-AS1",
          "gene_hgnc_id": 58549,
          "hgvs_c": "n.1511C>T",
          "hgvs_p": null,
          "transcript": "NR_110818.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_110818.1"
        }
      ],
      "gene_symbol": "RAP1GAP2",
      "gene_hgnc_id": 29176,
      "dbsnp": "rs746815636",
      "frequency_reference_population": 0.0000018595932,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 3,
      "gnomad_exomes_af": 0.00000136863,
      "gnomad_genomes_af": 0.00000658146,
      "gnomad_exomes_ac": 2,
      "gnomad_genomes_ac": 1,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.8698805570602417,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.07000000029802322,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.84,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.9705,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.39,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 9.352,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.07,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 4,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3_Moderate",
      "acmg_by_gene": [
        {
          "score": 4,
          "benign_score": 0,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001411048.1",
          "gene_symbol": "RAP1GAP2",
          "hgnc_id": 29176,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.466G>A",
          "hgvs_p": "p.Glu156Lys"
        },
        {
          "score": 4,
          "benign_score": 0,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000574885.1",
          "gene_symbol": "ENSG00000262884",
          "hgnc_id": 58549,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.1511C>T",
          "hgvs_p": null
        },
        {
          "score": 4,
          "benign_score": 0,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NR_110818.1",
          "gene_symbol": "RAP1GAP2-AS1",
          "hgnc_id": 58549,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.1511C>T",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}