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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-34993124-T-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=34993124&ref=T&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 34993124,
      "ref": "T",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "NM_013975.4",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "NM_013975.4",
          "protein_id": "NP_039269.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1009,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3030,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000378526.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_013975.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000378526.9",
          "protein_id": "ENSP00000367787.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1009,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3030,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_013975.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000378526.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000262327.9",
          "protein_id": "ENSP00000262327.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 949,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2850,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000262327.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1482+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000585941.5",
          "protein_id": "ENSP00000468479.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 544,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1636,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000585941.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000858902.1",
          "protein_id": "ENSP00000528961.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1009,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3030,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000858902.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000858903.1",
          "protein_id": "ENSP00000528962.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1009,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3030,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000858903.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000932519.1",
          "protein_id": "ENSP00000602578.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1009,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3030,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932519.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000932520.1",
          "protein_id": "ENSP00000602579.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1009,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3030,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932520.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 21,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "LIG3",
          "gene_hgnc_id": 6600,
          "hgvs_c": "c.1455+432T>G",
          "hgvs_p": null,
          "transcript": "ENST00000961393.1",
          "protein_id": "ENSP00000631452.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": null,
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          "cds_length": 3030,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        {
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          "consequences": [
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          ],
          "exon_rank": null,
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          "intron_rank": 8,
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          "gene_symbol": "LIG3",
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          "hgvs_c": "c.1455+432T>G",
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          "transcript": "ENST00000961396.1",
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          "cds_start": null,
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          "transcript": "ENST00000961395.1",
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          "cds_start": null,
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        {
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          "gene_symbol": "LIG3",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "custom_annotations": null
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  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.