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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-34993124-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=34993124&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 34993124,
"ref": "T",
"alt": "G",
"effect": "intron_variant",
"transcript": "NM_013975.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "NM_013975.4",
"protein_id": "NP_039269.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
"cds_end": null,
"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000378526.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_013975.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000378526.9",
"protein_id": "ENSP00000367787.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
"cds_end": null,
"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_013975.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000378526.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000262327.9",
"protein_id": "ENSP00000262327.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 949,
"cds_start": null,
"cds_end": null,
"cds_length": 2850,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000262327.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1482+432T>G",
"hgvs_p": null,
"transcript": "ENST00000585941.5",
"protein_id": "ENSP00000468479.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 544,
"cds_start": null,
"cds_end": null,
"cds_length": 1636,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000585941.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000858902.1",
"protein_id": "ENSP00000528961.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
"cds_end": null,
"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858902.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000858903.1",
"protein_id": "ENSP00000528962.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
"cds_end": null,
"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858903.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000932519.1",
"protein_id": "ENSP00000602578.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
"cds_end": null,
"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932519.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000932520.1",
"protein_id": "ENSP00000602579.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
"cds_end": null,
"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932520.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000961393.1",
"protein_id": "ENSP00000631452.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
"cds_end": null,
"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961393.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000961396.1",
"protein_id": "ENSP00000631455.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1009,
"cds_start": null,
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"cds_length": 3030,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961396.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1416+432T>G",
"hgvs_p": null,
"transcript": "ENST00000961395.1",
"protein_id": "ENSP00000631454.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 996,
"cds_start": null,
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"cds_length": 2991,
"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 19,
"intron_rank": 8,
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"gene_symbol": "LIG3",
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"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "ENST00000961394.1",
"protein_id": "ENSP00000631453.1",
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"aa_start": null,
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"cds_start": null,
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"cds_length": 2955,
"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000961394.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 19,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1311+432T>G",
"hgvs_p": null,
"transcript": "ENST00000858900.1",
"protein_id": "ENSP00000528959.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"gene_symbol": "LIG3",
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"hgvs_c": "c.1311+432T>G",
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"transcript": "ENST00000858904.1",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "NM_002311.5",
"protein_id": "NP_002302.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_002311.5"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 19,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "LIG3",
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"hgvs_c": "c.1245+432T>G",
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"transcript": "ENST00000858901.1",
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"biotype": "protein_coding",
"feature": "ENST00000858901.1"
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 8,
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"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1482+432T>G",
"hgvs_p": null,
"transcript": "XM_047435968.1",
"protein_id": "XP_047291924.1",
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"feature": "XM_047435968.1"
},
{
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"strand": true,
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],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "XM_047435969.1",
"protein_id": "XP_047291925.1",
"transcript_support_level": null,
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},
{
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"consequences": [
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],
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"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "XM_047435970.1",
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},
{
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"protein_coding": true,
"strand": true,
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"intron_variant"
],
"exon_rank": null,
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"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
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"hgvs_c": "c.1482+432T>G",
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"transcript": "XM_005257970.5",
"protein_id": "XP_005258027.1",
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},
{
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"consequences": [
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],
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"intron_rank_end": null,
"gene_symbol": "LIG3",
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"hgvs_c": "c.1455+432T>G",
"hgvs_p": null,
"transcript": "XM_017024624.2",
"protein_id": "XP_016880113.1",
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_017024624.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "LIG3",
"gene_hgnc_id": 6600,
"hgvs_c": "c.1482+432T>G",
"hgvs_p": null,
"transcript": "XM_047435971.1",
"protein_id": "XP_047291927.1",
"transcript_support_level": null,
"aa_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047435971.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
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{
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{
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"splice_prediction_selected": "Benign",
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{
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"verdict": "Benign",
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],
"clinvar_disease": "",
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"clinvar_review_status": "",
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"custom_annotations": null
}
],
"message": null
}