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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-39687906-C-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=39687906&ref=C&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 39687906,
      "ref": "C",
      "alt": "A",
      "effect": "stop_gained",
      "transcript": "ENST00000300658.9",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "NM_033419.5",
          "protein_id": "NP_219487.3",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 320,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 963,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2687,
          "mane_select": "ENST00000300658.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "ENST00000300658.9",
          "protein_id": "ENSP00000300658.4",
          "transcript_support_level": 1,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 320,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 963,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2687,
          "mane_select": "NM_033419.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "NM_001291728.2",
          "protein_id": "NP_001278657.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 299,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 900,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2624,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "ENST00000429199.6",
          "protein_id": "ENSP00000415765.2",
          "transcript_support_level": 2,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 299,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 900,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 970,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "NM_001291726.2",
          "protein_id": "NP_001278655.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 269,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 810,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2534,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "ENST00000378011.8",
          "protein_id": "ENSP00000367250.4",
          "transcript_support_level": 2,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 269,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 810,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2533,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "NM_001291730.2",
          "protein_id": "NP_001278659.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 206,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 621,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2345,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "NM_001291732.2",
          "protein_id": "NP_001278661.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 185,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 558,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2282,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "NM_001291733.2",
          "protein_id": "NP_001278662.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 148,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 447,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2220,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "ENST00000579146.5",
          "protein_id": "ENSP00000463234.1",
          "transcript_support_level": 2,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 148,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 447,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2220,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "XM_011525480.2",
          "protein_id": "XP_011523782.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 241,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 726,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 2482,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "E",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*",
          "transcript": "XM_047437083.1",
          "protein_id": "XP_047293039.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 154,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 465,
          "cdna_start": 152,
          "cdna_end": null,
          "cdna_length": 596,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "n.152G>T",
          "hgvs_p": null,
          "transcript": "ENST00000309862.10",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3028,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "n.144G>T",
          "hgvs_p": null,
          "transcript": "ENST00000582276.1",
          "protein_id": null,
          "transcript_support_level": 4,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 546,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "n.94G>T",
          "hgvs_p": null,
          "transcript": "ENST00000584620.5",
          "protein_id": "ENSP00000463011.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 804,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PGAP3",
          "gene_hgnc_id": 23719,
          "hgvs_c": "c.-35-1887G>T",
          "hgvs_p": null,
          "transcript": "ENST00000584856.1",
          "protein_id": "ENSP00000463785.1",
          "transcript_support_level": 4,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 69,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 211,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 538,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "c.-754C>A",
          "hgvs_p": null,
          "transcript": "ENST00000578199.5",
          "protein_id": "ENSP00000462808.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 603,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1812,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2526,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "n.-195C>A",
          "hgvs_p": null,
          "transcript": "ENST00000584014.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 849,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "c.-760C>A",
          "hgvs_p": null,
          "transcript": "NM_001289936.2",
          "protein_id": "NP_001276865.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1240,
          "cds_start": -4,
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          "cds_length": 3723,
          "cdna_start": null,
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          "cdna_length": 4909,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "c.-754C>A",
          "hgvs_p": null,
          "transcript": "NM_001005862.3",
          "protein_id": "NP_001005862.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1225,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3678,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4858,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "c.-1061C>A",
          "hgvs_p": null,
          "transcript": "NM_001382782.1",
          "protein_id": "NP_001369711.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1225,
          "cds_start": -4,
          "cds_end": null,
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          "cdna_start": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 31,
          "intron_rank": null,
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          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "c.-805C>A",
          "hgvs_p": null,
          "transcript": "ENST00000584601.5",
          "protein_id": "ENSP00000462438.1",
          "transcript_support_level": 2,
          "aa_start": null,
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          "aa_length": 1225,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 4792,
          "mane_select": null,
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          "feature": null
        },
        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
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          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "c.-754C>A",
          "hgvs_p": null,
          "transcript": "NM_001289938.2",
          "protein_id": "NP_001276867.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 603,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1812,
          "cdna_start": null,
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          "cdna_length": 2551,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": null,
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 32,
          "intron_rank": null,
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          "gene_symbol": "ERBB2",
          "gene_hgnc_id": 3430,
          "hgvs_c": "c.-980C>A",
          "hgvs_p": null,
          "transcript": "XM_047435590.1",
          "protein_id": "XP_047291546.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 1240,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3723,
          "cdna_start": null,
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          "cdna_length": 5129,
          "mane_select": null,
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          "feature": null
        }
      ],
      "gene_symbol": "PGAP3",
      "gene_hgnc_id": 23719,
      "dbsnp": "rs1242562412",
      "frequency_reference_population": 0.0000065828362,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 10,
      "gnomad_exomes_af": 0.00000512094,
      "gnomad_genomes_af": 0.0000197153,
      "gnomad_exomes_ac": 7,
      "gnomad_genomes_ac": 3,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.5400000214576721,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.54,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 3.908,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 18,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 18,
          "benign_score": 0,
          "pathogenic_score": 18,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "ENST00000300658.9",
          "gene_symbol": "PGAP3",
          "hgnc_id": 23719,
          "effects": [
            "stop_gained"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.109G>T",
          "hgvs_p": "p.Glu37*"
        },
        {
          "score": 8,
          "benign_score": 4,
          "pathogenic_score": 12,
          "criteria": [
            "PP3_Strong",
            "PP5_Very_Strong",
            "BS2"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "NM_001289936.2",
          "gene_symbol": "ERBB2",
          "hgnc_id": 3430,
          "effects": [
            "upstream_gene_variant"
          ],
          "inheritance_mode": "Unknown,AD",
          "hgvs_c": "c.-760C>A",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Hyperphosphatasia with intellectual disability syndrome 4,Inborn genetic diseases",
      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:2",
      "phenotype_combined": "Inborn genetic diseases|Hyperphosphatasia with intellectual disability syndrome 4",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}