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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-41758476-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=41758476&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 41758476,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_002230.4",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "NM_002230.4",
          "protein_id": "NP_002221.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000393931.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_002230.4"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000393931.8",
          "protein_id": "ENSP00000377508.3",
          "transcript_support_level": 1,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_002230.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393931.8"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000310706.9",
          "protein_id": "ENSP00000311113.5",
          "transcript_support_level": 1,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000310706.9"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "NM_001352773.2",
          "protein_id": "NP_001339702.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352773.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "NM_001352774.2",
          "protein_id": "NP_001339703.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352774.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "NM_001352775.2",
          "protein_id": "NP_001339704.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352775.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "NM_001352776.2",
          "protein_id": "NP_001339705.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352776.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "NM_001352777.2",
          "protein_id": "NP_001339706.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001352777.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "NM_021991.4",
          "protein_id": "NP_068831.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_021991.4"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000393930.5",
          "protein_id": "ENSP00000377507.1",
          "transcript_support_level": 5,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393930.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885261.1",
          "protein_id": "ENSP00000555320.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885261.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885262.1",
          "protein_id": "ENSP00000555321.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885262.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885263.1",
          "protein_id": "ENSP00000555322.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
          "aa_length": 745,
          "cds_start": 1696,
          "cds_end": null,
          "cds_length": 2238,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000885263.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885264.1",
          "protein_id": "ENSP00000555323.1",
          "transcript_support_level": null,
          "aa_start": 566,
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          "aa_length": 745,
          "cds_start": 1696,
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        },
        {
          "aa_ref": "A",
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          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
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          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885265.1",
          "protein_id": "ENSP00000555324.1",
          "transcript_support_level": null,
          "aa_start": 566,
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          "cds_start": 1696,
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885265.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885266.1",
          "protein_id": "ENSP00000555325.1",
          "transcript_support_level": null,
          "aa_start": 566,
          "aa_end": null,
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          "cds_start": 1696,
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          "biotype": "protein_coding",
          "feature": "ENST00000885266.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885268.1",
          "protein_id": "ENSP00000555327.1",
          "transcript_support_level": null,
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        {
          "aa_ref": "A",
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          ],
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          "intron_rank": null,
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          "gene_symbol": "JUP",
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          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885269.1",
          "protein_id": "ENSP00000555328.1",
          "transcript_support_level": null,
          "aa_start": 566,
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          "biotype": "protein_coding",
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        {
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          "strand": false,
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          ],
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          "exon_count": 15,
          "intron_rank": null,
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          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885270.1",
          "protein_id": "ENSP00000555329.1",
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          "cds_start": 1696,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000885270.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JUP",
          "gene_hgnc_id": 6207,
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "transcript": "ENST00000885271.1",
          "protein_id": "ENSP00000555330.1",
          "transcript_support_level": null,
          "aa_start": 566,
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          "cds_start": 1696,
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          "cdna_start": null,
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      "allele_count_reference_population": 5,
      "gnomad_exomes_af": 0.00000273635,
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      "gnomad_exomes_ac": 4,
      "gnomad_genomes_ac": 1,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.8063539266586304,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.31,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.713,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.03,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 7.842,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "acmg_score": 3,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3",
      "acmg_by_gene": [
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          "score": 3,
          "benign_score": 0,
          "pathogenic_score": 3,
          "criteria": [
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            "PP3"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_002230.4",
          "gene_symbol": "JUP",
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          "effects": [
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          "inheritance_mode": "AR,AD",
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      ],
      "clinvar_disease": "Cardiovascular phenotype,not provided,not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:3",
      "phenotype_combined": "not specified|not provided|Cardiovascular phenotype",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}