← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-44320051-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=44320051&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 44320051,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "ENST00000377095.10",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1030G>C",
"hgvs_p": "p.Gly344Arg",
"transcript": "NM_001143780.3",
"protein_id": "NP_001137252.1",
"transcript_support_level": null,
"aa_start": 344,
"aa_end": null,
"aa_length": 359,
"cds_start": 1030,
"cds_end": null,
"cds_length": 1080,
"cdna_start": 1158,
"cdna_end": null,
"cdna_length": 1581,
"mane_select": "ENST00000377095.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1030G>C",
"hgvs_p": "p.Gly344Arg",
"transcript": "ENST00000377095.10",
"protein_id": "ENSP00000366299.4",
"transcript_support_level": 1,
"aa_start": 344,
"aa_end": null,
"aa_length": 359,
"cds_start": 1030,
"cds_end": null,
"cds_length": 1080,
"cdna_start": 1158,
"cdna_end": null,
"cdna_length": 1581,
"mane_select": "NM_001143780.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1006G>C",
"hgvs_p": "p.Gly336Arg",
"transcript": "ENST00000225308.12",
"protein_id": "ENSP00000225308.8",
"transcript_support_level": 1,
"aa_start": 336,
"aa_end": null,
"aa_length": 351,
"cds_start": 1006,
"cds_end": null,
"cds_length": 1056,
"cdna_start": 1181,
"cdna_end": null,
"cdna_length": 1607,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1024G>C",
"hgvs_p": "p.Gly342Arg",
"transcript": "NM_001321241.2",
"protein_id": "NP_001308170.1",
"transcript_support_level": null,
"aa_start": 342,
"aa_end": null,
"aa_length": 357,
"cds_start": 1024,
"cds_end": null,
"cds_length": 1074,
"cdna_start": 1152,
"cdna_end": null,
"cdna_length": 1575,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1006G>C",
"hgvs_p": "p.Gly336Arg",
"transcript": "NM_016016.4",
"protein_id": "NP_057100.1",
"transcript_support_level": null,
"aa_start": 336,
"aa_end": null,
"aa_length": 351,
"cds_start": 1006,
"cds_end": null,
"cds_length": 1056,
"cdna_start": 1134,
"cdna_end": null,
"cdna_length": 1557,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1006G>C",
"hgvs_p": "p.Gly336Arg",
"transcript": "ENST00000590194.5",
"protein_id": "ENSP00000467681.1",
"transcript_support_level": 5,
"aa_start": 336,
"aa_end": null,
"aa_length": 351,
"cds_start": 1006,
"cds_end": null,
"cds_length": 1056,
"cdna_start": 1133,
"cdna_end": null,
"cdna_length": 1542,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.961G>C",
"hgvs_p": "p.Gly321Arg",
"transcript": "NM_001321240.2",
"protein_id": "NP_001308169.1",
"transcript_support_level": null,
"aa_start": 321,
"aa_end": null,
"aa_length": 336,
"cds_start": 961,
"cds_end": null,
"cds_length": 1011,
"cdna_start": 1089,
"cdna_end": null,
"cdna_length": 1512,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.961G>C",
"hgvs_p": "p.Gly321Arg",
"transcript": "ENST00000537904.6",
"protein_id": "ENSP00000444540.1",
"transcript_support_level": 2,
"aa_start": 321,
"aa_end": null,
"aa_length": 336,
"cds_start": 961,
"cds_end": null,
"cds_length": 1011,
"cdna_start": 1093,
"cdna_end": null,
"cdna_length": 1274,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.751G>C",
"hgvs_p": "p.Gly251Arg",
"transcript": "ENST00000588767.5",
"protein_id": "ENSP00000466615.1",
"transcript_support_level": 5,
"aa_start": 251,
"aa_end": null,
"aa_length": 266,
"cds_start": 751,
"cds_end": null,
"cds_length": 801,
"cdna_start": 751,
"cdna_end": null,
"cdna_length": 807,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.727G>C",
"hgvs_p": "p.Gly243Arg",
"transcript": "NM_001366726.1",
"protein_id": "NP_001353655.1",
"transcript_support_level": null,
"aa_start": 243,
"aa_end": null,
"aa_length": 258,
"cds_start": 727,
"cds_end": null,
"cds_length": 777,
"cdna_start": 1066,
"cdna_end": null,
"cdna_length": 1489,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.634G>C",
"hgvs_p": "p.Gly212Arg",
"transcript": "ENST00000586016.5",
"protein_id": "ENSP00000466676.1",
"transcript_support_level": 5,
"aa_start": 212,
"aa_end": null,
"aa_length": 227,
"cds_start": 634,
"cds_end": null,
"cds_length": 684,
"cdna_start": 778,
"cdna_end": null,
"cdna_length": 1156,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1048G>C",
"hgvs_p": "p.Gly350Arg",
"transcript": "XM_011524880.4",
"protein_id": "XP_011523182.1",
"transcript_support_level": null,
"aa_start": 350,
"aa_end": null,
"aa_length": 365,
"cds_start": 1048,
"cds_end": null,
"cds_length": 1098,
"cdna_start": 1176,
"cdna_end": null,
"cdna_length": 1599,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1048G>C",
"hgvs_p": "p.Gly350Arg",
"transcript": "XM_047436234.1",
"protein_id": "XP_047292190.1",
"transcript_support_level": null,
"aa_start": 350,
"aa_end": null,
"aa_length": 365,
"cds_start": 1048,
"cds_end": null,
"cds_length": 1098,
"cdna_start": 2309,
"cdna_end": null,
"cdna_length": 2732,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.1024G>C",
"hgvs_p": "p.Gly342Arg",
"transcript": "XM_047436235.1",
"protein_id": "XP_047292191.1",
"transcript_support_level": null,
"aa_start": 342,
"aa_end": null,
"aa_length": 357,
"cds_start": 1024,
"cds_end": null,
"cds_length": 1074,
"cdna_start": 2285,
"cdna_end": null,
"cdna_length": 2708,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.979G>C",
"hgvs_p": "p.Gly327Arg",
"transcript": "XM_047436236.1",
"protein_id": "XP_047292192.1",
"transcript_support_level": null,
"aa_start": 327,
"aa_end": null,
"aa_length": 342,
"cds_start": 979,
"cds_end": null,
"cds_length": 1029,
"cdna_start": 2240,
"cdna_end": null,
"cdna_length": 2663,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.961G>C",
"hgvs_p": "p.Gly321Arg",
"transcript": "XM_047436237.1",
"protein_id": "XP_047292193.1",
"transcript_support_level": null,
"aa_start": 321,
"aa_end": null,
"aa_length": 336,
"cds_start": 961,
"cds_end": null,
"cds_length": 1011,
"cdna_start": 2222,
"cdna_end": null,
"cdna_length": 2645,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.745G>C",
"hgvs_p": "p.Gly249Arg",
"transcript": "XM_047436238.1",
"protein_id": "XP_047292194.1",
"transcript_support_level": null,
"aa_start": 249,
"aa_end": null,
"aa_length": 264,
"cds_start": 745,
"cds_end": null,
"cds_length": 795,
"cdna_start": 852,
"cdna_end": null,
"cdna_length": 1275,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.745G>C",
"hgvs_p": "p.Gly249Arg",
"transcript": "XM_047436239.1",
"protein_id": "XP_047292195.1",
"transcript_support_level": null,
"aa_start": 249,
"aa_end": null,
"aa_length": 264,
"cds_start": 745,
"cds_end": null,
"cds_length": 795,
"cdna_start": 829,
"cdna_end": null,
"cdna_length": 1252,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.745G>C",
"hgvs_p": "p.Gly249Arg",
"transcript": "XM_047436240.1",
"protein_id": "XP_047292196.1",
"transcript_support_level": null,
"aa_start": 249,
"aa_end": null,
"aa_length": 264,
"cds_start": 745,
"cds_end": null,
"cds_length": 795,
"cdna_start": 807,
"cdna_end": null,
"cdna_length": 1230,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "c.727G>C",
"hgvs_p": "p.Gly243Arg",
"transcript": "XM_047436241.1",
"protein_id": "XP_047292197.1",
"transcript_support_level": null,
"aa_start": 243,
"aa_end": null,
"aa_length": 258,
"cds_start": 727,
"cds_end": null,
"cds_length": 777,
"cdna_start": 811,
"cdna_end": null,
"cdna_length": 1234,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.1793G>C",
"hgvs_p": null,
"transcript": "ENST00000591006.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2217,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.507G>C",
"hgvs_p": null,
"transcript": "ENST00000592372.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 867,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.*380G>C",
"hgvs_p": null,
"transcript": "ENST00000593166.1",
"protein_id": "ENSP00000467964.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 797,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.1336G>C",
"hgvs_p": null,
"transcript": "NR_159401.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1759,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.1024G>C",
"hgvs_p": null,
"transcript": "NR_159402.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1447,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.1360G>C",
"hgvs_p": null,
"transcript": "NR_159403.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1783,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.1291G>C",
"hgvs_p": null,
"transcript": "NR_159404.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1714,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.1226G>C",
"hgvs_p": null,
"transcript": "NR_159405.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1649,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"hgvs_c": "n.*380G>C",
"hgvs_p": null,
"transcript": "ENST00000593166.1",
"protein_id": "ENSP00000467964.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 797,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "SLC25A39",
"gene_hgnc_id": 24279,
"dbsnp": "rs747423245",
"frequency_reference_population": 0.0000020522643,
"hom_count_reference_population": 0,
"allele_count_reference_population": 3,
"gnomad_exomes_af": 0.00000205226,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 3,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9289869666099548,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.62,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.9713,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.1,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 2.169,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 4,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3_Moderate",
"acmg_by_gene": [
{
"score": 4,
"benign_score": 0,
"pathogenic_score": 4,
"criteria": [
"PM2",
"PP3_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000377095.10",
"gene_symbol": "SLC25A39",
"hgnc_id": 24279,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1030G>C",
"hgvs_p": "p.Gly344Arg"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}