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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-44352760-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=44352760&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 8,
          "criteria": [
            "BP4_Strong",
            "BS1"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "GRN",
          "hgnc_id": 4601,
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "inheritance_mode": "AD,AR",
          "pathogenic_score": 0,
          "score": -8,
          "transcript": "NM_002087.4",
          "verdict": "Benign"
        }
      ],
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BS1",
      "acmg_score": -8,
      "allele_count_reference_population": 203,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.0651,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.57,
      "chr": "17",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "GRN-related frontotemporal lobar degeneration with Tdp43 inclusions,Inborn genetic diseases,Neuronal ceroid lipofuscinosis 11,not provided",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:4",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.019042760133743286,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2130,
          "cdna_start": 1784,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "NM_002087.4",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000053867.8",
          "protein_coding": true,
          "protein_id": "NP_002078.1",
          "strand": true,
          "transcript": "NM_002087.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2130,
          "cdna_start": 1784,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000053867.8",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_002087.4",
          "protein_coding": true,
          "protein_id": "ENSP00000053867.2",
          "strand": true,
          "transcript": "ENST00000053867.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2193,
          "cdna_start": 1847,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000900927.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570986.1",
          "strand": true,
          "transcript": "ENST00000900927.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2279,
          "cdna_start": 1937,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000900929.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570988.1",
          "strand": true,
          "transcript": "ENST00000900929.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2183,
          "cdna_start": 1837,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000900931.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570990.1",
          "strand": true,
          "transcript": "ENST00000900931.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2167,
          "cdna_start": 1821,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000900932.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570991.1",
          "strand": true,
          "transcript": "ENST00000900932.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2369,
          "cdna_start": 2027,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000918283.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000588342.1",
          "strand": true,
          "transcript": "ENST00000918283.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2394,
          "cdna_start": 2048,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000918285.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000588344.1",
          "strand": true,
          "transcript": "ENST00000918285.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2200,
          "cdna_start": 1860,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000918286.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000588345.1",
          "strand": true,
          "transcript": "ENST00000918286.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2271,
          "cdna_start": 1940,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000944506.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000614565.1",
          "strand": true,
          "transcript": "ENST00000944506.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 593,
          "aa_ref": "A",
          "aa_start": 582,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2366,
          "cdna_start": 2024,
          "cds_end": null,
          "cds_length": 1782,
          "cds_start": 1744,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000944507.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1744G>A",
          "hgvs_p": "p.Ala582Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000614566.1",
          "strand": true,
          "transcript": "ENST00000944507.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 577,
          "aa_ref": "A",
          "aa_start": 566,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2082,
          "cdna_start": 1740,
          "cds_end": null,
          "cds_length": 1734,
          "cds_start": 1696,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000900934.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1696G>A",
          "hgvs_p": "p.Ala566Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570993.1",
          "strand": true,
          "transcript": "ENST00000900934.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 573,
          "aa_ref": "A",
          "aa_start": 562,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2074,
          "cdna_start": 1728,
          "cds_end": null,
          "cds_length": 1722,
          "cds_start": 1684,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000900930.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1684G>A",
          "hgvs_p": "p.Ala562Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570989.1",
          "strand": true,
          "transcript": "ENST00000900930.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 569,
          "aa_ref": "A",
          "aa_start": 558,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2098,
          "cdna_start": 1754,
          "cds_end": null,
          "cds_length": 1710,
          "cds_start": 1672,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000900928.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1672G>A",
          "hgvs_p": "p.Ala558Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570987.1",
          "strand": true,
          "transcript": "ENST00000900928.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 568,
          "aa_ref": "A",
          "aa_start": 557,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2052,
          "cdna_start": 1709,
          "cds_end": null,
          "cds_length": 1707,
          "cds_start": 1669,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000900935.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1669G>A",
          "hgvs_p": "p.Ala557Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570994.1",
          "strand": true,
          "transcript": "ENST00000900935.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 558,
          "aa_ref": "A",
          "aa_start": 547,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2014,
          "cdna_start": 1673,
          "cds_end": null,
          "cds_length": 1677,
          "cds_start": 1639,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000918287.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1639G>A",
          "hgvs_p": "p.Ala547Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000588346.1",
          "strand": true,
          "transcript": "ENST00000918287.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 556,
          "aa_ref": "A",
          "aa_start": 545,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2213,
          "cdna_start": 1867,
          "cds_end": null,
          "cds_length": 1671,
          "cds_start": 1633,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000900926.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1633G>A",
          "hgvs_p": "p.Ala545Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570985.1",
          "strand": true,
          "transcript": "ENST00000900926.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 511,
          "aa_ref": "A",
          "aa_start": 500,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1884,
          "cdna_start": 1538,
          "cds_end": null,
          "cds_length": 1536,
          "cds_start": 1498,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000900933.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
          "hgvs_c": "c.1498G>A",
          "hgvs_p": "p.Ala500Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000570992.1",
          "strand": true,
          "transcript": "ENST00000900933.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 487,
          "aa_ref": "A",
          "aa_start": 476,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1812,
          "cdna_start": 1466,
          "cds_end": null,
          "cds_length": 1464,
          "cds_start": 1426,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000918284.1",
          "gene_hgnc_id": 4601,
          "gene_symbol": "GRN",
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  ]
}
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