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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-4539780-T-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=4539780&ref=T&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 4539780,
      "ref": "T",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_001105538.2",
      "consequences": [
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3622A>T",
          "hgvs_p": "p.Met1208Leu",
          "transcript": "NM_014520.4",
          "protein_id": "NP_055335.2",
          "transcript_support_level": null,
          "aa_start": 1208,
          "aa_end": null,
          "aa_length": 1328,
          "cds_start": 3622,
          "cds_end": null,
          "cds_length": 3987,
          "cdna_start": 3682,
          "cdna_end": null,
          "cdna_length": 4558,
          "mane_select": "ENST00000254718.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_014520.4"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3622A>T",
          "hgvs_p": "p.Met1208Leu",
          "transcript": "ENST00000254718.9",
          "protein_id": "ENSP00000254718.4",
          "transcript_support_level": 1,
          "aa_start": 1208,
          "aa_end": null,
          "aa_length": 1328,
          "cds_start": 3622,
          "cds_end": null,
          "cds_length": 3987,
          "cdna_start": 3682,
          "cdna_end": null,
          "cdna_length": 4558,
          "mane_select": "NM_014520.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000254718.9"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3379A>T",
          "hgvs_p": "p.Met1127Leu",
          "transcript": "ENST00000573116.5",
          "protein_id": "ENSP00000458919.1",
          "transcript_support_level": 1,
          "aa_start": 1127,
          "aa_end": null,
          "aa_length": 1251,
          "cds_start": 3379,
          "cds_end": null,
          "cds_length": 3756,
          "cdna_start": 3380,
          "cdna_end": null,
          "cdna_length": 3795,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000573116.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "n.1190A>T",
          "hgvs_p": null,
          "transcript": "ENST00000574547.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1607,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000574547.5"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3667A>T",
          "hgvs_p": "p.Met1223Leu",
          "transcript": "ENST00000932213.1",
          "protein_id": "ENSP00000602272.1",
          "transcript_support_level": null,
          "aa_start": 1223,
          "aa_end": null,
          "aa_length": 1343,
          "cds_start": 3667,
          "cds_end": null,
          "cds_length": 4032,
          "cdna_start": 3726,
          "cdna_end": null,
          "cdna_length": 4602,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932213.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3622A>T",
          "hgvs_p": "p.Met1208Leu",
          "transcript": "NM_001105538.2",
          "protein_id": "NP_001099008.1",
          "transcript_support_level": null,
          "aa_start": 1208,
          "aa_end": null,
          "aa_length": 1332,
          "cds_start": 3622,
          "cds_end": null,
          "cds_length": 3999,
          "cdna_start": 3682,
          "cdna_end": null,
          "cdna_length": 4095,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001105538.2"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3622A>T",
          "hgvs_p": "p.Met1208Leu",
          "transcript": "ENST00000381556.6",
          "protein_id": "ENSP00000370968.2",
          "transcript_support_level": 5,
          "aa_start": 1208,
          "aa_end": null,
          "aa_length": 1332,
          "cds_start": 3622,
          "cds_end": null,
          "cds_length": 3999,
          "cdna_start": 3684,
          "cdna_end": null,
          "cdna_length": 4104,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000381556.6"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3613A>T",
          "hgvs_p": "p.Met1205Leu",
          "transcript": "ENST00000932210.1",
          "protein_id": "ENSP00000602269.1",
          "transcript_support_level": null,
          "aa_start": 1205,
          "aa_end": null,
          "aa_length": 1325,
          "cds_start": 3613,
          "cds_end": null,
          "cds_length": 3978,
          "cdna_start": 3673,
          "cdna_end": null,
          "cdna_length": 4549,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932210.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3610A>T",
          "hgvs_p": "p.Met1204Leu",
          "transcript": "ENST00000896004.1",
          "protein_id": "ENSP00000566063.1",
          "transcript_support_level": null,
          "aa_start": 1204,
          "aa_end": null,
          "aa_length": 1324,
          "cds_start": 3610,
          "cds_end": null,
          "cds_length": 3975,
          "cdna_start": 3644,
          "cdna_end": null,
          "cdna_length": 4520,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000896004.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3592A>T",
          "hgvs_p": "p.Met1198Leu",
          "transcript": "ENST00000932217.1",
          "protein_id": "ENSP00000602276.1",
          "transcript_support_level": null,
          "aa_start": 1198,
          "aa_end": null,
          "aa_length": 1318,
          "cds_start": 3592,
          "cds_end": null,
          "cds_length": 3957,
          "cdna_start": 3651,
          "cdna_end": null,
          "cdna_length": 4420,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932217.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3580A>T",
          "hgvs_p": "p.Met1194Leu",
          "transcript": "ENST00000932211.1",
          "protein_id": "ENSP00000602270.1",
          "transcript_support_level": null,
          "aa_start": 1194,
          "aa_end": null,
          "aa_length": 1314,
          "cds_start": 3580,
          "cds_end": null,
          "cds_length": 3945,
          "cdna_start": 3640,
          "cdna_end": null,
          "cdna_length": 4516,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932211.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3553A>T",
          "hgvs_p": "p.Met1185Leu",
          "transcript": "ENST00000896005.1",
          "protein_id": "ENSP00000566064.1",
          "transcript_support_level": null,
          "aa_start": 1185,
          "aa_end": null,
          "aa_length": 1305,
          "cds_start": 3553,
          "cds_end": null,
          "cds_length": 3918,
          "cdna_start": 3583,
          "cdna_end": null,
          "cdna_length": 4459,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000896005.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3553A>T",
          "hgvs_p": "p.Met1185Leu",
          "transcript": "ENST00000932214.1",
          "protein_id": "ENSP00000602273.1",
          "transcript_support_level": null,
          "aa_start": 1185,
          "aa_end": null,
          "aa_length": 1305,
          "cds_start": 3553,
          "cds_end": null,
          "cds_length": 3918,
          "cdna_start": 3607,
          "cdna_end": null,
          "cdna_length": 4483,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932214.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3535A>T",
          "hgvs_p": "p.Met1179Leu",
          "transcript": "ENST00000932212.1",
          "protein_id": "ENSP00000602271.1",
          "transcript_support_level": null,
          "aa_start": 1179,
          "aa_end": null,
          "aa_length": 1299,
          "cds_start": 3535,
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          "cdna_start": 3594,
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          "cdna_length": 4470,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000932212.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3514A>T",
          "hgvs_p": "p.Met1172Leu",
          "transcript": "ENST00000932215.1",
          "protein_id": "ENSP00000602274.1",
          "transcript_support_level": null,
          "aa_start": 1172,
          "aa_end": null,
          "aa_length": 1292,
          "cds_start": 3514,
          "cds_end": null,
          "cds_length": 3879,
          "cdna_start": 3535,
          "cdna_end": null,
          "cdna_length": 4411,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932215.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.3433A>T",
          "hgvs_p": "p.Met1145Leu",
          "transcript": "ENST00000932216.1",
          "protein_id": "ENSP00000602275.1",
          "transcript_support_level": null,
          "aa_start": 1145,
          "aa_end": null,
          "aa_length": 1265,
          "cds_start": 3433,
          "cds_end": null,
          "cds_length": 3798,
          "cdna_start": 3454,
          "cdna_end": null,
          "cdna_length": 4330,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932216.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.2929A>T",
          "hgvs_p": "p.Met977Leu",
          "transcript": "ENST00000896003.1",
          "protein_id": "ENSP00000566062.1",
          "transcript_support_level": null,
          "aa_start": 977,
          "aa_end": null,
          "aa_length": 1097,
          "cds_start": 2929,
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          "cds_length": 3294,
          "cdna_start": 3005,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000896003.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.2866A>T",
          "hgvs_p": "p.Met956Leu",
          "transcript": "XM_011523616.3",
          "protein_id": "XP_011521918.1",
          "transcript_support_level": null,
          "aa_start": 956,
          "aa_end": null,
          "aa_length": 1076,
          "cds_start": 2866,
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          "cds_length": 3231,
          "cdna_start": 2974,
          "cdna_end": null,
          "cdna_length": 3850,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_011523616.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.*122A>T",
          "hgvs_p": null,
          "transcript": "ENST00000572759.1",
          "protein_id": "ENSP00000460087.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 68,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 207,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 588,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000572759.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYBBP1A",
          "gene_hgnc_id": 7546,
          "hgvs_c": "c.*122A>T",
          "hgvs_p": null,
          "transcript": "XM_024450536.2",
          "protein_id": "XP_024306304.1",
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      "splice_source_selected": "max_spliceai",
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      "acmg_classification": "Benign",
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          "transcript": "NM_001105538.2",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.