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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-4555303-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=4555303&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 4555303,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000254718.9",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"hgvs_c": "c.22C>A",
"hgvs_p": "p.Gln8Lys",
"transcript": "NM_014520.4",
"protein_id": "NP_055335.2",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 1328,
"cds_start": 22,
"cds_end": null,
"cds_length": 3987,
"cdna_start": 82,
"cdna_end": null,
"cdna_length": 4558,
"mane_select": "ENST00000254718.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"hgvs_c": "c.22C>A",
"hgvs_p": "p.Gln8Lys",
"transcript": "ENST00000254718.9",
"protein_id": "ENSP00000254718.4",
"transcript_support_level": 1,
"aa_start": 8,
"aa_end": null,
"aa_length": 1328,
"cds_start": 22,
"cds_end": null,
"cds_length": 3987,
"cdna_start": 82,
"cdna_end": null,
"cdna_length": 4558,
"mane_select": "NM_014520.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"hgvs_c": "c.22C>A",
"hgvs_p": "p.Gln8Lys",
"transcript": "NM_001105538.2",
"protein_id": "NP_001099008.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 1332,
"cds_start": 22,
"cds_end": null,
"cds_length": 3999,
"cdna_start": 82,
"cdna_end": null,
"cdna_length": 4095,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"hgvs_c": "c.22C>A",
"hgvs_p": "p.Gln8Lys",
"transcript": "ENST00000381556.6",
"protein_id": "ENSP00000370968.2",
"transcript_support_level": 5,
"aa_start": 8,
"aa_end": null,
"aa_length": 1332,
"cds_start": 22,
"cds_end": null,
"cds_length": 3999,
"cdna_start": 84,
"cdna_end": null,
"cdna_length": 4104,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"hgvs_c": "c.22C>A",
"hgvs_p": "p.Gln8Lys",
"transcript": "XM_024450536.2",
"protein_id": "XP_024306304.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 1120,
"cds_start": 22,
"cds_end": null,
"cds_length": 3363,
"cdna_start": 82,
"cdna_end": null,
"cdna_length": 4421,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"hgvs_c": "c.22C>A",
"hgvs_p": "p.Gln8Lys",
"transcript": "XM_047435119.1",
"protein_id": "XP_047291075.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 723,
"cds_start": 22,
"cds_end": null,
"cds_length": 2172,
"cdna_start": 82,
"cdna_end": null,
"cdna_length": 2331,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"hgvs_c": "n.56C>A",
"hgvs_p": null,
"transcript": "ENST00000570986.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 982,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 1,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000304693",
"gene_hgnc_id": null,
"hgvs_c": "n.-206G>T",
"hgvs_p": null,
"transcript": "ENST00000805485.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 397,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "MYBBP1A",
"gene_hgnc_id": 7546,
"dbsnp": "rs3809849",
"frequency_reference_population": 0.00001722266,
"hom_count_reference_population": 0,
"allele_count_reference_population": 25,
"gnomad_exomes_af": 0.0000172227,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 25,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.048233985900878906,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.106,
"revel_prediction": "Benign",
"alphamissense_score": 0.0688,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.67,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.383,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -8,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BS2",
"acmg_by_gene": [
{
"score": -8,
"benign_score": 8,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BS2"
],
"verdict": "Benign",
"transcript": "ENST00000254718.9",
"gene_symbol": "MYBBP1A",
"hgnc_id": 7546,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.22C>A",
"hgvs_p": "p.Gln8Lys"
},
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000805485.1",
"gene_symbol": "ENSG00000304693",
"hgnc_id": null,
"effects": [
"upstream_gene_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.-206G>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}