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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-46018629-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=46018629&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 46018629,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001377265.1",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2185G>A",
"hgvs_p": "p.Val729Met",
"transcript": "NM_001377265.1",
"protein_id": "NP_001364194.1",
"transcript_support_level": null,
"aa_start": 729,
"aa_end": null,
"aa_length": 833,
"cds_start": 2185,
"cds_end": null,
"cds_length": 2502,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000262410.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001377265.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2185G>A",
"hgvs_p": "p.Val729Met",
"transcript": "ENST00000262410.10",
"protein_id": "ENSP00000262410.6",
"transcript_support_level": 1,
"aa_start": 729,
"aa_end": null,
"aa_length": 833,
"cds_start": 2185,
"cds_end": null,
"cds_length": 2502,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001377265.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000262410.10"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1894G>A",
"hgvs_p": "p.Val632Met",
"transcript": "ENST00000344290.10",
"protein_id": "ENSP00000340820.6",
"transcript_support_level": 1,
"aa_start": 632,
"aa_end": null,
"aa_length": 736,
"cds_start": 1894,
"cds_end": null,
"cds_length": 2211,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000344290.10"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1009G>A",
"hgvs_p": "p.Val337Met",
"transcript": "ENST00000351559.10",
"protein_id": "ENSP00000303214.7",
"transcript_support_level": 1,
"aa_start": 337,
"aa_end": null,
"aa_length": 441,
"cds_start": 1009,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000351559.10"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.922G>A",
"hgvs_p": "p.Val308Met",
"transcript": "ENST00000420682.7",
"protein_id": "ENSP00000413056.2",
"transcript_support_level": 1,
"aa_start": 308,
"aa_end": null,
"aa_length": 412,
"cds_start": 922,
"cds_end": null,
"cds_length": 1239,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000420682.7"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.835G>A",
"hgvs_p": "p.Val279Met",
"transcript": "ENST00000446361.7",
"protein_id": "ENSP00000408975.3",
"transcript_support_level": 1,
"aa_start": 279,
"aa_end": null,
"aa_length": 383,
"cds_start": 835,
"cds_end": null,
"cds_length": 1152,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000446361.7"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.742G>A",
"hgvs_p": "p.Val248Met",
"transcript": "ENST00000334239.12",
"protein_id": "ENSP00000334886.8",
"transcript_support_level": 1,
"aa_start": 248,
"aa_end": null,
"aa_length": 352,
"cds_start": 742,
"cds_end": null,
"cds_length": 1059,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000334239.12"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2272G>A",
"hgvs_p": "p.Val758Met",
"transcript": "ENST00000972115.1",
"protein_id": "ENSP00000642174.1",
"transcript_support_level": null,
"aa_start": 758,
"aa_end": null,
"aa_length": 862,
"cds_start": 2272,
"cds_end": null,
"cds_length": 2589,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000972115.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2185G>A",
"hgvs_p": "p.Val729Met",
"transcript": "ENST00000884784.1",
"protein_id": "ENSP00000554843.1",
"transcript_support_level": null,
"aa_start": 729,
"aa_end": null,
"aa_length": 833,
"cds_start": 2185,
"cds_end": null,
"cds_length": 2502,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884784.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2092G>A",
"hgvs_p": "p.Val698Met",
"transcript": "ENST00000884782.1",
"protein_id": "ENSP00000554841.1",
"transcript_support_level": null,
"aa_start": 698,
"aa_end": null,
"aa_length": 802,
"cds_start": 2092,
"cds_end": null,
"cds_length": 2409,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884782.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2074G>A",
"hgvs_p": "p.Val692Met",
"transcript": "ENST00000884778.1",
"protein_id": "ENSP00000554837.1",
"transcript_support_level": null,
"aa_start": 692,
"aa_end": null,
"aa_length": 796,
"cds_start": 2074,
"cds_end": null,
"cds_length": 2391,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884778.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2014G>A",
"hgvs_p": "p.Val672Met",
"transcript": "NM_001123066.4",
"protein_id": "NP_001116538.2",
"transcript_support_level": null,
"aa_start": 672,
"aa_end": null,
"aa_length": 776,
"cds_start": 2014,
"cds_end": null,
"cds_length": 2331,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001123066.4"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2014G>A",
"hgvs_p": "p.Val672Met",
"transcript": "ENST00000415613.6",
"protein_id": "ENSP00000410838.2",
"transcript_support_level": 5,
"aa_start": 672,
"aa_end": null,
"aa_length": 776,
"cds_start": 2014,
"cds_end": null,
"cds_length": 2331,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000415613.6"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1987G>A",
"hgvs_p": "p.Val663Met",
"transcript": "ENST00000884781.1",
"protein_id": "ENSP00000554840.1",
"transcript_support_level": null,
"aa_start": 663,
"aa_end": null,
"aa_length": 767,
"cds_start": 1987,
"cds_end": null,
"cds_length": 2304,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884781.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1987G>A",
"hgvs_p": "p.Val663Met",
"transcript": "ENST00000972116.1",
"protein_id": "ENSP00000642175.1",
"transcript_support_level": null,
"aa_start": 663,
"aa_end": null,
"aa_length": 767,
"cds_start": 1987,
"cds_end": null,
"cds_length": 2304,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000972116.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1981G>A",
"hgvs_p": "p.Val661Met",
"transcript": "ENST00000884779.1",
"protein_id": "ENSP00000554838.1",
"transcript_support_level": null,
"aa_start": 661,
"aa_end": null,
"aa_length": 765,
"cds_start": 1981,
"cds_end": null,
"cds_length": 2298,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884779.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1960G>A",
"hgvs_p": "p.Val654Met",
"transcript": "NM_016835.5",
"protein_id": "NP_058519.3",
"transcript_support_level": null,
"aa_start": 654,
"aa_end": null,
"aa_length": 758,
"cds_start": 1960,
"cds_end": null,
"cds_length": 2277,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_016835.5"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1960G>A",
"hgvs_p": "p.Val654Met",
"transcript": "ENST00000571987.5",
"protein_id": "ENSP00000458742.1",
"transcript_support_level": 5,
"aa_start": 654,
"aa_end": null,
"aa_length": 758,
"cds_start": 1960,
"cds_end": null,
"cds_length": 2277,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000571987.5"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1900G>A",
"hgvs_p": "p.Val634Met",
"transcript": "ENST00000972112.1",
"protein_id": "ENSP00000642171.1",
"transcript_support_level": null,
"aa_start": 634,
"aa_end": null,
"aa_length": 738,
"cds_start": 1900,
"cds_end": null,
"cds_length": 2217,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000972112.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1894G>A",
"hgvs_p": "p.Val632Met",
"transcript": "NM_001377266.1",
"protein_id": "NP_001364195.1",
"transcript_support_level": null,
"aa_start": 632,
"aa_end": null,
"aa_length": 736,
"cds_start": 1894,
"cds_end": null,
"cds_length": 2211,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001377266.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1807G>A",
"hgvs_p": "p.Val603Met",
"transcript": "ENST00000884787.1",
"protein_id": "ENSP00000554846.1",
"transcript_support_level": null,
"aa_start": 603,
"aa_end": null,
"aa_length": 707,
"cds_start": 1807,
"cds_end": null,
"cds_length": 2124,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884787.1"
},
{
"aa_ref": "V",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1120G>A",
"hgvs_p": "p.Val374Met",
"transcript": "ENST00000972111.1",
"protein_id": "ENSP00000642170.1",
"transcript_support_level": null,
"aa_start": 374,
"aa_end": null,
"aa_length": 478,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
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{
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"canonical": false,
"protein_coding": false,
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],
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"exon_count": 7,
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"biotype": "pseudogene",
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},
{
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"non_coding_transcript_exon_variant"
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"exon_count": 5,
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"feature": "ENST00000703980.1"
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{
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"strand": true,
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{
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"gene_symbol": "MAPT",
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"biotype": "retained_intron",
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{
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"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
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"gene_symbol": "MAPT",
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"hgvs_c": "n.840G>A",
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"transcript": "NR_165166.1",
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"biotype": "pseudogene",
"feature": "NR_165166.1"
}
],
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"dbsnp": "rs63750570",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.8952093124389648,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.898,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9472,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.46,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 4.184,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 14,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PM1,PM2,PP3_Moderate,PP5_Very_Strong",
"acmg_by_gene": [
{
"score": 14,
"benign_score": 0,
"pathogenic_score": 14,
"criteria": [
"PM1",
"PM2",
"PP3_Moderate",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "NM_001377265.1",
"gene_symbol": "MAPT",
"hgnc_id": 6893,
"effects": [
"missense_variant"
],
"inheritance_mode": "Unknown,AR,AD",
"hgvs_c": "c.2185G>A",
"hgvs_p": "p.Val729Met"
}
],
"clinvar_disease": "Frontotemporal dementia,not provided",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:2 O:1",
"phenotype_combined": "Frontotemporal dementia|not provided",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}