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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-46018675-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=46018675&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 46018675,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000262410.10",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2231C>T",
"hgvs_p": "p.Ser744Leu",
"transcript": "NM_001377265.1",
"protein_id": "NP_001364194.1",
"transcript_support_level": null,
"aa_start": 744,
"aa_end": null,
"aa_length": 833,
"cds_start": 2231,
"cds_end": null,
"cds_length": 2502,
"cdna_start": 2381,
"cdna_end": null,
"cdna_length": 6815,
"mane_select": "ENST00000262410.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2231C>T",
"hgvs_p": "p.Ser744Leu",
"transcript": "ENST00000262410.10",
"protein_id": "ENSP00000262410.6",
"transcript_support_level": 1,
"aa_start": 744,
"aa_end": null,
"aa_length": 833,
"cds_start": 2231,
"cds_end": null,
"cds_length": 2502,
"cdna_start": 2381,
"cdna_end": null,
"cdna_length": 6815,
"mane_select": "NM_001377265.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1940C>T",
"hgvs_p": "p.Ser647Leu",
"transcript": "ENST00000344290.10",
"protein_id": "ENSP00000340820.6",
"transcript_support_level": 1,
"aa_start": 647,
"aa_end": null,
"aa_length": 736,
"cds_start": 1940,
"cds_end": null,
"cds_length": 2211,
"cdna_start": 2084,
"cdna_end": null,
"cdna_length": 2609,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1055C>T",
"hgvs_p": "p.Ser352Leu",
"transcript": "ENST00000351559.10",
"protein_id": "ENSP00000303214.7",
"transcript_support_level": 1,
"aa_start": 352,
"aa_end": null,
"aa_length": 441,
"cds_start": 1055,
"cds_end": null,
"cds_length": 1326,
"cdna_start": 1205,
"cdna_end": null,
"cdna_length": 5639,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.968C>T",
"hgvs_p": "p.Ser323Leu",
"transcript": "ENST00000420682.7",
"protein_id": "ENSP00000413056.2",
"transcript_support_level": 1,
"aa_start": 323,
"aa_end": null,
"aa_length": 412,
"cds_start": 968,
"cds_end": null,
"cds_length": 1239,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 1871,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.881C>T",
"hgvs_p": "p.Ser294Leu",
"transcript": "ENST00000446361.7",
"protein_id": "ENSP00000408975.3",
"transcript_support_level": 1,
"aa_start": 294,
"aa_end": null,
"aa_length": 383,
"cds_start": 881,
"cds_end": null,
"cds_length": 1152,
"cdna_start": 911,
"cdna_end": null,
"cdna_length": 5345,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.788C>T",
"hgvs_p": "p.Ser263Leu",
"transcript": "ENST00000334239.12",
"protein_id": "ENSP00000334886.8",
"transcript_support_level": 1,
"aa_start": 263,
"aa_end": null,
"aa_length": 352,
"cds_start": 788,
"cds_end": null,
"cds_length": 1059,
"cdna_start": 824,
"cdna_end": null,
"cdna_length": 1107,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2060C>T",
"hgvs_p": "p.Ser687Leu",
"transcript": "NM_001123066.4",
"protein_id": "NP_001116538.2",
"transcript_support_level": null,
"aa_start": 687,
"aa_end": null,
"aa_length": 776,
"cds_start": 2060,
"cds_end": null,
"cds_length": 2331,
"cdna_start": 2210,
"cdna_end": null,
"cdna_length": 6644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2060C>T",
"hgvs_p": "p.Ser687Leu",
"transcript": "ENST00000415613.6",
"protein_id": "ENSP00000410838.2",
"transcript_support_level": 5,
"aa_start": 687,
"aa_end": null,
"aa_length": 776,
"cds_start": 2060,
"cds_end": null,
"cds_length": 2331,
"cdna_start": 2060,
"cdna_end": null,
"cdna_length": 2331,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2006C>T",
"hgvs_p": "p.Ser669Leu",
"transcript": "NM_016835.5",
"protein_id": "NP_058519.3",
"transcript_support_level": null,
"aa_start": 669,
"aa_end": null,
"aa_length": 758,
"cds_start": 2006,
"cds_end": null,
"cds_length": 2277,
"cdna_start": 2156,
"cdna_end": null,
"cdna_length": 6590,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.2006C>T",
"hgvs_p": "p.Ser669Leu",
"transcript": "ENST00000571987.5",
"protein_id": "ENSP00000458742.1",
"transcript_support_level": 5,
"aa_start": 669,
"aa_end": null,
"aa_length": 758,
"cds_start": 2006,
"cds_end": null,
"cds_length": 2277,
"cdna_start": 2006,
"cdna_end": null,
"cdna_length": 2277,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1940C>T",
"hgvs_p": "p.Ser647Leu",
"transcript": "NM_001377266.1",
"protein_id": "NP_001364195.1",
"transcript_support_level": null,
"aa_start": 647,
"aa_end": null,
"aa_length": 736,
"cds_start": 1940,
"cds_end": null,
"cds_length": 2211,
"cdna_start": 2090,
"cdna_end": null,
"cdna_length": 6524,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1055C>T",
"hgvs_p": "p.Ser352Leu",
"transcript": "NM_005910.6",
"protein_id": "NP_005901.2",
"transcript_support_level": null,
"aa_start": 352,
"aa_end": null,
"aa_length": 441,
"cds_start": 1055,
"cds_end": null,
"cds_length": 1326,
"cdna_start": 1205,
"cdna_end": null,
"cdna_length": 5639,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1055C>T",
"hgvs_p": "p.Ser352Leu",
"transcript": "ENST00000574436.5",
"protein_id": "ENSP00000460965.1",
"transcript_support_level": 5,
"aa_start": 352,
"aa_end": null,
"aa_length": 441,
"cds_start": 1055,
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"cdna_start": 1055,
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"cdna_length": 1326,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.1004C>T",
"hgvs_p": "p.Ser335Leu",
"transcript": "ENST00000680674.1",
"protein_id": "ENSP00000505478.1",
"transcript_support_level": null,
"aa_start": 335,
"aa_end": null,
"aa_length": 424,
"cds_start": 1004,
"cds_end": null,
"cds_length": 1275,
"cdna_start": 1181,
"cdna_end": null,
"cdna_length": 1936,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.968C>T",
"hgvs_p": "p.Ser323Leu",
"transcript": "NM_001123067.4",
"protein_id": "NP_001116539.1",
"transcript_support_level": null,
"aa_start": 323,
"aa_end": null,
"aa_length": 412,
"cds_start": 968,
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"cdna_start": 1118,
"cdna_end": null,
"cdna_length": 5552,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.962C>T",
"hgvs_p": "p.Ser321Leu",
"transcript": "NM_001203252.2",
"protein_id": "NP_001190181.1",
"transcript_support_level": null,
"aa_start": 321,
"aa_end": null,
"aa_length": 410,
"cds_start": 962,
"cds_end": null,
"cds_length": 1233,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 5546,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.962C>T",
"hgvs_p": "p.Ser321Leu",
"transcript": "ENST00000431008.7",
"protein_id": "ENSP00000389250.3",
"transcript_support_level": 5,
"aa_start": 321,
"aa_end": null,
"aa_length": 410,
"cds_start": 962,
"cds_end": null,
"cds_length": 1233,
"cdna_start": 962,
"cdna_end": null,
"cdna_length": 1233,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.881C>T",
"hgvs_p": "p.Ser294Leu",
"transcript": "NM_016834.5",
"protein_id": "NP_058518.1",
"transcript_support_level": null,
"aa_start": 294,
"aa_end": null,
"aa_length": 383,
"cds_start": 881,
"cds_end": null,
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"cdna_start": 1031,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.875C>T",
"hgvs_p": "p.Ser292Leu",
"transcript": "NM_001203251.2",
"protein_id": "NP_001190180.1",
"transcript_support_level": null,
"aa_start": 292,
"aa_end": null,
"aa_length": 381,
"cds_start": 875,
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"cdna_start": 1025,
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"cdna_length": 5459,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.875C>T",
"hgvs_p": "p.Ser292Leu",
"transcript": "ENST00000535772.6",
"protein_id": "ENSP00000443028.2",
"transcript_support_level": 5,
"aa_start": 292,
"aa_end": null,
"aa_length": 381,
"cds_start": 875,
"cds_end": null,
"cds_length": 1146,
"cdna_start": 1028,
"cdna_end": null,
"cdna_length": 1353,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.788C>T",
"hgvs_p": "p.Ser263Leu",
"transcript": "NM_001377268.1",
"protein_id": "NP_001364197.1",
"transcript_support_level": null,
"aa_start": 263,
"aa_end": null,
"aa_length": 352,
"cds_start": 788,
"cds_end": null,
"cds_length": 1059,
"cdna_start": 1091,
"cdna_end": null,
"cdna_length": 5525,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"hgvs_c": "c.788C>T",
"hgvs_p": "p.Ser263Leu",
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{
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{
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{
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{
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"transcript": "NM_001377267.1",
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}
],
"gene_symbol": "MAPT",
"gene_hgnc_id": 6893,
"dbsnp": "rs63750425",
"frequency_reference_population": 0.00000247833,
"hom_count_reference_population": 0,
"allele_count_reference_population": 4,
"gnomad_exomes_af": 0.00000205216,
"gnomad_genomes_af": 0.00000657393,
"gnomad_exomes_ac": 3,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9107069969177246,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.945,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9744,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.57,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 7.902,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 5,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3_Moderate,PP5",
"acmg_by_gene": [
{
"score": 5,
"benign_score": 0,
"pathogenic_score": 5,
"criteria": [
"PM2",
"PP3_Moderate",
"PP5"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000262410.10",
"gene_symbol": "MAPT",
"hgnc_id": 6893,
"effects": [
"missense_variant"
],
"inheritance_mode": "Unknown,AR,AD",
"hgvs_c": "c.2231C>T",
"hgvs_p": "p.Ser744Leu"
}
],
"clinvar_disease": " 1, progressive,Supranuclear palsy,not provided",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "O:1",
"phenotype_combined": "not provided|Supranuclear palsy, progressive, 1",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}