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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-47184589-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=47184589&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 47184589,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000066544.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "NM_001256.6",
"protein_id": "NP_001247.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 824,
"cds_start": -4,
"cds_end": null,
"cds_length": 2475,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5830,
"mane_select": "ENST00000066544.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "ENST00000066544.8",
"protein_id": "ENSP00000066544.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 824,
"cds_start": -4,
"cds_end": null,
"cds_length": 2475,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5830,
"mane_select": "NM_001256.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "ENST00000531206.5",
"protein_id": "ENSP00000434614.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 830,
"cds_start": -4,
"cds_end": null,
"cds_length": 2493,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3177,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "ENST00000527547.5",
"protein_id": "ENSP00000437339.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 823,
"cds_start": -4,
"cds_end": null,
"cds_length": 2472,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2579,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "NM_001114091.4",
"protein_id": "NP_001107563.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 830,
"cds_start": -4,
"cds_end": null,
"cds_length": 2493,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5848,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "NM_001293089.3",
"protein_id": "NP_001280018.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 823,
"cds_start": -4,
"cds_end": null,
"cds_length": 2472,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5827,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "NM_001353035.2",
"protein_id": "NP_001339964.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 769,
"cds_start": -4,
"cds_end": null,
"cds_length": 2310,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5766,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "NM_001353047.2",
"protein_id": "NP_001339976.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 768,
"cds_start": -4,
"cds_end": null,
"cds_length": 2307,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5763,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.-8-2952C>T",
"hgvs_p": null,
"transcript": "NM_001293091.3",
"protein_id": "NP_001280020.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 763,
"cds_start": -4,
"cds_end": null,
"cds_length": 2292,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5682,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.-8-2952C>T",
"hgvs_p": null,
"transcript": "NM_001353050.2",
"protein_id": "NP_001339979.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 727,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
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"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.-8-2952C>T",
"hgvs_p": null,
"transcript": "NM_001353049.2",
"protein_id": "NP_001339978.1",
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},
{
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"consequences": [
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],
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"gene_symbol": "CDC27",
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"transcript": "NM_001353051.2",
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},
{
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],
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"gene_symbol": "CDC27",
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"hgvs_c": "c.28-2952C>T",
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"transcript": "ENST00000575483.5",
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},
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],
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"gene_symbol": "CDC27",
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},
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],
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},
{
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],
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"intron_rank": 1,
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},
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],
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},
{
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],
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"intron_rank": 1,
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"gene_symbol": "CDC27",
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"hgvs_c": "n.163-2952C>T",
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"transcript": "ENST00000532575.1",
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},
{
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"strand": false,
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],
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"exon_count": 5,
"intron_rank": 1,
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"gene_symbol": "CDC27",
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"transcript": "ENST00000532893.5",
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],
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],
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},
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],
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"gene_symbol": "CDC27",
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"hgvs_c": "c.28-2952C>T",
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"transcript": "XM_011525546.4",
"protein_id": "XP_011523848.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
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"gene_symbol": "CDC27",
"gene_hgnc_id": 1728,
"hgvs_c": "c.28-2952C>T",
"hgvs_p": null,
"transcript": "XM_047437229.1",
"protein_id": "XP_047293185.1",
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},
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}
],
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}