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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-58695170-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=58695170&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PS3",
"PM1",
"PM2",
"PP3_Moderate",
"PP5"
],
"effects": [
"missense_variant"
],
"gene_symbol": "RAD51C",
"hgnc_id": 9820,
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"inheritance_mode": "AR,AD",
"pathogenic_score": 11,
"score": 11,
"transcript": "NM_058216.3",
"verdict": "Pathogenic"
}
],
"acmg_classification": "Pathogenic",
"acmg_criteria": "PS3,PM1,PM2,PP3_Moderate,PP5",
"acmg_score": 11,
"allele_count_reference_population": 1,
"alphamissense_prediction": null,
"alphamissense_score": 0.0821,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.32,
"chr": "17",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_disease": "Fanconi anemia complementation group O,Hereditary cancer-predisposing syndrome",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "LP:1 US:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.2655949592590332,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 376,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2562,
"cdna_start": 427,
"cds_end": null,
"cds_length": 1131,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_058216.3",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000337432.9",
"protein_coding": true,
"protein_id": "NP_478123.1",
"strand": true,
"transcript": "NM_058216.3",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 376,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2562,
"cdna_start": 427,
"cds_end": null,
"cds_length": 1131,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000337432.9",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_058216.3",
"protein_coding": true,
"protein_id": "ENSP00000336701.4",
"strand": true,
"transcript": "ENST00000337432.9",
"transcript_support_level": 1
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 135,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 567,
"cdna_start": 401,
"cds_end": null,
"cds_length": 408,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 2,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000421782.3",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000391450.2",
"strand": true,
"transcript": "ENST00000421782.3",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1098,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 8,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000482007.5",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "n.385G>A",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000433332.1",
"strand": true,
"transcript": "ENST00000482007.5",
"transcript_support_level": 1
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 410,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1406,
"cdna_start": 453,
"cds_end": null,
"cds_length": 1233,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000930423.1",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600482.1",
"strand": true,
"transcript": "ENST00000930423.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 392,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1355,
"cdna_start": 456,
"cds_end": null,
"cds_length": 1179,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000875229.1",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000545288.1",
"strand": true,
"transcript": "ENST00000875229.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 346,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1319,
"cdna_start": 456,
"cds_end": null,
"cds_length": 1041,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000583539.5",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000463121.1",
"strand": true,
"transcript": "ENST00000583539.5",
"transcript_support_level": 2
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 339,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1152,
"cdna_start": 416,
"cds_end": null,
"cds_length": 1020,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000948099.1",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000618158.1",
"strand": true,
"transcript": "ENST00000948099.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 313,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1115,
"cdna_start": 412,
"cds_end": null,
"cds_length": 942,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000930424.1",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600483.1",
"strand": true,
"transcript": "ENST00000930424.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 305,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1375,
"cdna_start": 427,
"cds_end": null,
"cds_length": 918,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000697690.1",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000513399.1",
"strand": true,
"transcript": "ENST00000697690.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 286,
"aa_ref": "V",
"aa_start": 12,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1400,
"cdna_start": 277,
"cds_end": null,
"cds_length": 861,
"cds_start": 34,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000697686.1",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.34G>A",
"hgvs_p": "p.Val12Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000513397.1",
"strand": true,
"transcript": "ENST00000697686.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 259,
"aa_ref": "V",
"aa_start": 12,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1618,
"cdna_start": 477,
"cds_end": null,
"cds_length": 780,
"cds_start": 34,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000697694.1",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.34G>A",
"hgvs_p": "p.Val12Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000513402.1",
"strand": true,
"transcript": "ENST00000697694.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 256,
"aa_ref": "V",
"aa_start": 8,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 779,
"cdna_start": 23,
"cds_end": null,
"cds_length": 771,
"cds_start": 22,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000413590.5",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.22G>A",
"hgvs_p": "p.Val8Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000401741.1",
"strand": true,
"transcript": "ENST00000413590.5",
"transcript_support_level": 2
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 229,
"aa_ref": "V",
"aa_start": 12,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2761,
"cdna_start": 353,
"cds_end": null,
"cds_length": 690,
"cds_start": 34,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000461271.6",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.34G>A",
"hgvs_p": "p.Val12Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000464056.2",
"strand": true,
"transcript": "ENST00000461271.6",
"transcript_support_level": 5
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 212,
"aa_ref": "V",
"aa_start": 61,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 639,
"cdna_start": 181,
"cds_end": null,
"cds_length": 639,
"cds_start": 181,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000425173.5",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.181G>A",
"hgvs_p": "p.Val61Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000407282.1",
"strand": true,
"transcript": "ENST00000425173.5",
"transcript_support_level": 5
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 135,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 591,
"cdna_start": 427,
"cds_end": null,
"cds_length": 408,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 2,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_002876.4",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_002867.1",
"strand": true,
"transcript": "NM_002876.4",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 131,
"aa_ref": "V",
"aa_start": 41,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 686,
"cdna_start": 121,
"cds_end": null,
"cds_length": 396,
"cds_start": 121,
"consequences": [
"missense_variant"
],
"exon_count": 3,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000622327.4",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.121G>A",
"hgvs_p": "p.Val41Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000482326.1",
"strand": true,
"transcript": "ENST00000622327.4",
"transcript_support_level": 3
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 377,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2565,
"cdna_start": 427,
"cds_end": null,
"cds_length": 1134,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_006722001.5",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_006722064.1",
"strand": true,
"transcript": "XM_006722001.5",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 342,
"aa_ref": "V",
"aa_start": 129,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2501,
"cdna_start": 427,
"cds_end": null,
"cds_length": 1029,
"cds_start": 385,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_006722002.5",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_006722065.1",
"strand": true,
"transcript": "XM_006722002.5",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 260,
"aa_ref": "V",
"aa_start": 12,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2491,
"cdna_start": 353,
"cds_end": null,
"cds_length": 783,
"cds_start": 34,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_006722004.4",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.34G>A",
"hgvs_p": "p.Val12Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_006722067.1",
"strand": true,
"transcript": "XM_006722004.4",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 260,
"aa_ref": "V",
"aa_start": 12,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2541,
"cdna_start": 403,
"cds_end": null,
"cds_length": 783,
"cds_start": 34,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_011525094.3",
"gene_hgnc_id": 9820,
"gene_symbol": "RAD51C",
"hgvs_c": "c.34G>A",
"hgvs_p": "p.Val12Ile",
"intron_rank": null,
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