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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-59028616-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=59028616&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5_Moderate"
          ],
          "effects": [
            "stop_gained"
          ],
          "gene_symbol": "TRIM37",
          "hgnc_id": 7523,
          "hgvs_c": "c.2056C>T",
          "hgvs_p": "p.Arg686*",
          "inheritance_mode": "AR",
          "pathogenic_score": 12,
          "score": 12,
          "transcript": "NM_001353084.2",
          "verdict": "Pathogenic"
        }
      ],
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5_Moderate",
      "acmg_score": 12,
      "allele_count_reference_population": 4,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.5,
      "chr": "17",
      "clinvar_classification": "Pathogenic",
      "clinvar_disease": "Mulibrey nanism syndrome",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "P:1",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.5,
      "computational_source_selected": "BayesDel_noAF",
      "consequences": [
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 964,
          "aa_ref": "R",
          "aa_start": 686,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4489,
          "cdna_start": 2475,
          "cds_end": null,
          "cds_length": 2895,
          "cds_start": 2056,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 24,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "NM_015294.6",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2056C>T",
          "hgvs_p": "p.Arg686*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000262294.12",
          "protein_coding": true,
          "protein_id": "NP_056109.1",
          "strand": false,
          "transcript": "NM_015294.6",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 964,
          "aa_ref": "R",
          "aa_start": 686,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 4489,
          "cdna_start": 2475,
          "cds_end": null,
          "cds_length": 2895,
          "cds_start": 2056,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 24,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000262294.12",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2056C>T",
          "hgvs_p": "p.Arg686*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_015294.6",
          "protein_coding": true,
          "protein_id": "ENSP00000262294.7",
          "strand": false,
          "transcript": "ENST00000262294.12",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 964,
          "aa_ref": "R",
          "aa_start": 686,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3622,
          "cdna_start": 2516,
          "cds_end": null,
          "cds_length": 2895,
          "cds_start": 2056,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 25,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000393066.7",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2056C>T",
          "hgvs_p": "p.Arg686*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000376785.3",
          "strand": false,
          "transcript": "ENST00000393066.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4310,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 24,
          "exon_rank": 20,
          "exon_rank_end": null,
          "feature": "ENST00000577554.5",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "n.*1928C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000462340.1",
          "strand": false,
          "transcript": "ENST00000577554.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4310,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 24,
          "exon_rank": 20,
          "exon_rank_end": null,
          "feature": "ENST00000577554.5",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "n.*1928C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000462340.1",
          "strand": false,
          "transcript": "ENST00000577554.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 981,
          "aa_ref": "R",
          "aa_start": 703,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4386,
          "cdna_start": 2378,
          "cds_end": null,
          "cds_length": 2946,
          "cds_start": 2107,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 25,
          "exon_rank": 20,
          "exon_rank_end": null,
          "feature": "ENST00000938636.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2107C>T",
          "hgvs_p": "p.Arg703*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000608695.1",
          "strand": false,
          "transcript": "ENST00000938636.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 980,
          "aa_ref": "R",
          "aa_start": 693,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4365,
          "cdna_start": 2333,
          "cds_end": null,
          "cds_length": 2943,
          "cds_start": 2077,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 24,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000964654.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2077C>T",
          "hgvs_p": "p.Arg693*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000634713.1",
          "strand": false,
          "transcript": "ENST00000964654.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 973,
          "aa_ref": "R",
          "aa_start": 686,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4516,
          "cdna_start": 2475,
          "cds_end": null,
          "cds_length": 2922,
          "cds_start": 2056,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 24,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "NM_001353084.2",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2056C>T",
          "hgvs_p": "p.Arg686*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001340013.1",
          "strand": false,
          "transcript": "NM_001353084.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 973,
          "aa_ref": "R",
          "aa_start": 686,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4496,
          "cdna_start": 2455,
          "cds_end": null,
          "cds_length": 2922,
          "cds_start": 2056,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 24,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000885247.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2056C>T",
          "hgvs_p": "p.Arg686*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555306.1",
          "strand": false,
          "transcript": "ENST00000885247.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 968,
          "aa_ref": "R",
          "aa_start": 690,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4476,
          "cdna_start": 2466,
          "cds_end": null,
          "cds_length": 2907,
          "cds_start": 2068,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 24,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000964648.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2068C>T",
          "hgvs_p": "p.Arg690*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000634707.1",
          "strand": false,
          "transcript": "ENST00000964648.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 964,
          "aa_ref": "R",
          "aa_start": 686,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3583,
          "cdna_start": 2475,
          "cds_end": null,
          "cds_length": 2895,
          "cds_start": 2056,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 25,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "NM_001005207.5",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2056C>T",
          "hgvs_p": "p.Arg686*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001005207.1",
          "strand": false,
          "transcript": "NM_001005207.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 956,
          "aa_ref": "R",
          "aa_start": 669,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4316,
          "cdna_start": 2280,
          "cds_end": null,
          "cds_length": 2871,
          "cds_start": 2005,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 23,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000885260.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2005C>T",
          "hgvs_p": "p.Arg669*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555319.1",
          "strand": false,
          "transcript": "ENST00000885260.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 947,
          "aa_ref": "R",
          "aa_start": 669,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4438,
          "cdna_start": 2424,
          "cds_end": null,
          "cds_length": 2844,
          "cds_start": 2005,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 23,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "NM_001353086.2",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2005C>T",
          "hgvs_p": "p.Arg669*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001340015.1",
          "strand": false,
          "transcript": "NM_001353086.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 947,
          "aa_ref": "R",
          "aa_start": 669,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4448,
          "cdna_start": 2433,
          "cds_end": null,
          "cds_length": 2844,
          "cds_start": 2005,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 23,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000885243.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.2005C>T",
          "hgvs_p": "p.Arg669*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555302.1",
          "strand": false,
          "transcript": "ENST00000885243.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 943,
          "aa_ref": "R",
          "aa_start": 665,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4408,
          "cdna_start": 2394,
          "cds_end": null,
          "cds_length": 2832,
          "cds_start": 1993,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 24,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "ENST00000885246.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.1993C>T",
          "hgvs_p": "p.Arg665*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555305.1",
          "strand": false,
          "transcript": "ENST00000885246.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 939,
          "aa_ref": "R",
          "aa_start": 652,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4414,
          "cdna_start": 2373,
          "cds_end": null,
          "cds_length": 2820,
          "cds_start": 1954,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 23,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "NM_001353082.2",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.1954C>T",
          "hgvs_p": "p.Arg652*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001340011.1",
          "strand": false,
          "transcript": "NM_001353082.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 939,
          "aa_ref": "R",
          "aa_start": 652,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4274,
          "cdna_start": 2233,
          "cds_end": null,
          "cds_length": 2820,
          "cds_start": 1954,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 23,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000885256.1",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.1954C>T",
          "hgvs_p": "p.Arg652*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555315.1",
          "strand": false,
          "transcript": "ENST00000885256.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 930,
          "aa_ref": "R",
          "aa_start": 652,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4387,
          "cdna_start": 2373,
          "cds_end": null,
          "cds_length": 2793,
          "cds_start": 1954,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 23,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "NM_001320987.3",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.1954C>T",
          "hgvs_p": "p.Arg652*",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001307916.1",
          "strand": false,
          "transcript": "NM_001320987.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "*",
          "aa_end": null,
          "aa_length": 930,
          "aa_ref": "R",
          "aa_start": 652,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3548,
          "cdna_start": 2319,
          "cds_end": null,
          "cds_length": 2793,
          "cds_start": 1954,
          "consequences": [
            "stop_gained"
          ],
          "exon_count": 23,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000393065.6",
          "gene_hgnc_id": 7523,
          "gene_symbol": "TRIM37",
          "hgvs_c": "c.1954C>T",
          "hgvs_p": "p.Arg652*",
          "intron_rank": null,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.