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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-59049297-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=59049297&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 59049297,
      "ref": "G",
      "alt": "A",
      "effect": "stop_gained",
      "transcript": "NM_001353084.2",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*",
          "transcript": "NM_015294.6",
          "protein_id": "NP_056109.1",
          "transcript_support_level": null,
          "aa_start": 471,
          "aa_end": null,
          "aa_length": 964,
          "cds_start": 1411,
          "cds_end": null,
          "cds_length": 2895,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000262294.12",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_015294.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*",
          "transcript": "ENST00000262294.12",
          "protein_id": "ENSP00000262294.7",
          "transcript_support_level": 1,
          "aa_start": 471,
          "aa_end": null,
          "aa_length": 964,
          "cds_start": 1411,
          "cds_end": null,
          "cds_length": 2895,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_015294.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000262294.12"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*",
          "transcript": "ENST00000393066.7",
          "protein_id": "ENSP00000376785.3",
          "transcript_support_level": 1,
          "aa_start": 471,
          "aa_end": null,
          "aa_length": 964,
          "cds_start": 1411,
          "cds_end": null,
          "cds_length": 2895,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393066.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "n.*1283C>T",
          "hgvs_p": null,
          "transcript": "ENST00000577554.5",
          "protein_id": "ENSP00000462340.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000577554.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "n.*1283C>T",
          "hgvs_p": null,
          "transcript": "ENST00000577554.5",
          "protein_id": "ENSP00000462340.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000577554.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1462C>T",
          "hgvs_p": "p.Arg488*",
          "transcript": "ENST00000938636.1",
          "protein_id": "ENSP00000608695.1",
          "transcript_support_level": null,
          "aa_start": 488,
          "aa_end": null,
          "aa_length": 981,
          "cds_start": 1462,
          "cds_end": null,
          "cds_length": 2946,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000938636.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1432C>T",
          "hgvs_p": "p.Arg478*",
          "transcript": "ENST00000964654.1",
          "protein_id": "ENSP00000634713.1",
          "transcript_support_level": null,
          "aa_start": 478,
          "aa_end": null,
          "aa_length": 980,
          "cds_start": 1432,
          "cds_end": null,
          "cds_length": 2943,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000964654.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*",
          "transcript": "NM_001353084.2",
          "protein_id": "NP_001340013.1",
          "transcript_support_level": null,
          "aa_start": 471,
          "aa_end": null,
          "aa_length": 973,
          "cds_start": 1411,
          "cds_end": null,
          "cds_length": 2922,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353084.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*",
          "transcript": "ENST00000885247.1",
          "protein_id": "ENSP00000555306.1",
          "transcript_support_level": null,
          "aa_start": 471,
          "aa_end": null,
          "aa_length": 973,
          "cds_start": 1411,
          "cds_end": null,
          "cds_length": 2922,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885247.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1423C>T",
          "hgvs_p": "p.Arg475*",
          "transcript": "ENST00000964648.1",
          "protein_id": "ENSP00000634707.1",
          "transcript_support_level": null,
          "aa_start": 475,
          "aa_end": null,
          "aa_length": 968,
          "cds_start": 1423,
          "cds_end": null,
          "cds_length": 2907,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000964648.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*",
          "transcript": "NM_001005207.5",
          "protein_id": "NP_001005207.1",
          "transcript_support_level": null,
          "aa_start": 471,
          "aa_end": null,
          "aa_length": 964,
          "cds_start": 1411,
          "cds_end": null,
          "cds_length": 2895,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001005207.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1360C>T",
          "hgvs_p": "p.Arg454*",
          "transcript": "ENST00000885260.1",
          "protein_id": "ENSP00000555319.1",
          "transcript_support_level": null,
          "aa_start": 454,
          "aa_end": null,
          "aa_length": 956,
          "cds_start": 1360,
          "cds_end": null,
          "cds_length": 2871,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885260.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1360C>T",
          "hgvs_p": "p.Arg454*",
          "transcript": "NM_001353086.2",
          "protein_id": "NP_001340015.1",
          "transcript_support_level": null,
          "aa_start": 454,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 1360,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353086.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1360C>T",
          "hgvs_p": "p.Arg454*",
          "transcript": "ENST00000885243.1",
          "protein_id": "ENSP00000555302.1",
          "transcript_support_level": null,
          "aa_start": 454,
          "aa_end": null,
          "aa_length": 947,
          "cds_start": 1360,
          "cds_end": null,
          "cds_length": 2844,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885243.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1348C>T",
          "hgvs_p": "p.Arg450*",
          "transcript": "ENST00000885246.1",
          "protein_id": "ENSP00000555305.1",
          "transcript_support_level": null,
          "aa_start": 450,
          "aa_end": null,
          "aa_length": 943,
          "cds_start": 1348,
          "cds_end": null,
          "cds_length": 2832,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885246.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1309C>T",
          "hgvs_p": "p.Arg437*",
          "transcript": "NM_001353082.2",
          "protein_id": "NP_001340011.1",
          "transcript_support_level": null,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 939,
          "cds_start": 1309,
          "cds_end": null,
          "cds_length": 2820,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353082.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1309C>T",
          "hgvs_p": "p.Arg437*",
          "transcript": "ENST00000885256.1",
          "protein_id": "ENSP00000555315.1",
          "transcript_support_level": null,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 939,
          "cds_start": 1309,
          "cds_end": null,
          "cds_length": 2820,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885256.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1309C>T",
          "hgvs_p": "p.Arg437*",
          "transcript": "NM_001320987.3",
          "protein_id": "NP_001307916.1",
          "transcript_support_level": null,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 1309,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320987.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1309C>T",
          "hgvs_p": "p.Arg437*",
          "transcript": "ENST00000393065.6",
          "protein_id": "ENSP00000376784.2",
          "transcript_support_level": 2,
          "aa_start": 437,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 1309,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393065.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "*",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "stop_gained"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TRIM37",
          "gene_hgnc_id": 7523,
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*",
          "transcript": "ENST00000885250.1",
          "protein_id": "ENSP00000555309.1",
          "transcript_support_level": null,
          "aa_start": 471,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 1411,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885250.1"
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      "gene_symbol": "TRIM37",
      "gene_hgnc_id": 7523,
      "dbsnp": "rs386834001",
      "frequency_reference_population": 0.000018587798,
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      "gnomad_exomes_af": 0.0000198379,
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      "gnomad_exomes_homalt": 0,
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      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.33000001311302185,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
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      "alphamissense_score": null,
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      "bayesdelnoaf_score": 0.33,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 2.738,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "apogee2_score": null,
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      "acmg_score": 18,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 18,
          "benign_score": 0,
          "pathogenic_score": 18,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "NM_001353084.2",
          "gene_symbol": "TRIM37",
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          "effects": [
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          "inheritance_mode": "AR",
          "hgvs_c": "c.1411C>T",
          "hgvs_p": "p.Arg471*"
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      ],
      "clinvar_disease": "Mulibrey nanism syndrome,not provided",
      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:3",
      "phenotype_combined": "Mulibrey nanism syndrome|not provided",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}