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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-60747213-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=60747213&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 60747213,
"ref": "C",
"alt": "T",
"effect": "stop_gained",
"transcript": "NM_017679.5",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_017679.5",
"protein_id": "NP_060149.3",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 913,
"cds_start": 337,
"cds_end": null,
"cds_length": 2742,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3517,
"mane_select": "ENST00000407086.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "ENST00000407086.8",
"protein_id": "ENSP00000385323.2",
"transcript_support_level": 1,
"aa_start": 113,
"aa_end": null,
"aa_length": 913,
"cds_start": 337,
"cds_end": null,
"cds_length": 2742,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3517,
"mane_select": "NM_017679.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "ENST00000390652.9",
"protein_id": "ENSP00000375067.4",
"transcript_support_level": 1,
"aa_start": 113,
"aa_end": null,
"aa_length": 928,
"cds_start": 337,
"cds_end": null,
"cds_length": 2787,
"cdna_start": 368,
"cdna_end": null,
"cdna_length": 3531,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "ENST00000589222.5",
"protein_id": "ENSP00000466078.1",
"transcript_support_level": 1,
"aa_start": 113,
"aa_end": null,
"aa_length": 928,
"cds_start": 337,
"cds_end": null,
"cds_length": 2787,
"cdna_start": 405,
"cdna_end": null,
"cdna_length": 3673,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_001353144.2",
"protein_id": "NP_001340073.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 958,
"cds_start": 337,
"cds_end": null,
"cds_length": 2877,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3652,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_001330413.2",
"protein_id": "NP_001317342.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 950,
"cds_start": 337,
"cds_end": null,
"cds_length": 2853,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3628,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "ENST00000588462.5",
"protein_id": "ENSP00000468592.1",
"transcript_support_level": 5,
"aa_start": 113,
"aa_end": null,
"aa_length": 950,
"cds_start": 337,
"cds_end": null,
"cds_length": 2853,
"cdna_start": 337,
"cdna_end": null,
"cdna_length": 3559,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_001353145.2",
"protein_id": "NP_001340074.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 943,
"cds_start": 337,
"cds_end": null,
"cds_length": 2832,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3607,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_001330414.2",
"protein_id": "NP_001317343.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 935,
"cds_start": 337,
"cds_end": null,
"cds_length": 2808,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3583,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "ENST00000408905.7",
"protein_id": "ENSP00000386173.2",
"transcript_support_level": 5,
"aa_start": 113,
"aa_end": null,
"aa_length": 935,
"cds_start": 337,
"cds_end": null,
"cds_length": 2808,
"cdna_start": 337,
"cdna_end": null,
"cdna_length": 3514,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_001099432.3",
"protein_id": "NP_001092902.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 928,
"cds_start": 337,
"cds_end": null,
"cds_length": 2787,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3562,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_001320470.3",
"protein_id": "NP_001307399.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 928,
"cds_start": 337,
"cds_end": null,
"cds_length": 2787,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3674,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "NM_001353146.2",
"protein_id": "NP_001340075.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 921,
"cds_start": 337,
"cds_end": null,
"cds_length": 2766,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 3653,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*",
"transcript": "ENST00000588168.5",
"protein_id": "ENSP00000465328.1",
"transcript_support_level": 5,
"aa_start": 113,
"aa_end": null,
"aa_length": 134,
"cds_start": 337,
"cds_end": null,
"cds_length": 406,
"cdna_start": 476,
"cdna_end": null,
"cdna_length": 545,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.*95C>T",
"hgvs_p": null,
"transcript": "ENST00000586241.1",
"protein_id": "ENSP00000464864.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 558,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.389C>T",
"hgvs_p": null,
"transcript": "ENST00000589916.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 546,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.*281C>T",
"hgvs_p": null,
"transcript": "ENST00000591147.5",
"protein_id": "ENSP00000466075.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 590,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.518C>T",
"hgvs_p": null,
"transcript": "ENST00000591371.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 527,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.365C>T",
"hgvs_p": null,
"transcript": "ENST00000592393.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 569,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.*351C>T",
"hgvs_p": null,
"transcript": "ENST00000592848.5",
"protein_id": "ENSP00000467743.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 918,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.*95C>T",
"hgvs_p": null,
"transcript": "ENST00000586241.1",
"protein_id": "ENSP00000464864.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 558,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.*281C>T",
"hgvs_p": null,
"transcript": "ENST00000591147.5",
"protein_id": "ENSP00000466075.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 590,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"hgvs_c": "n.*351C>T",
"hgvs_p": null,
"transcript": "ENST00000592848.5",
"protein_id": "ENSP00000467743.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 918,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "BCAS3",
"gene_hgnc_id": 14347,
"dbsnp": "rs2144260660",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.6200000047683716,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.62,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 5.527,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 11,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5",
"acmg_by_gene": [
{
"score": 11,
"benign_score": 0,
"pathogenic_score": 11,
"criteria": [
"PVS1",
"PM2",
"PP5"
],
"verdict": "Pathogenic",
"transcript": "NM_017679.5",
"gene_symbol": "BCAS3",
"hgnc_id": 14347,
"effects": [
"stop_gained"
],
"inheritance_mode": "AR",
"hgvs_c": "c.337C>T",
"hgvs_p": "p.Gln113*"
}
],
"clinvar_disease": "Global developmental delay",
"clinvar_classification": "Likely pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "Global developmental delay",
"pathogenicity_classification_combined": "Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}