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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-61037952-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=61037952&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 61037952,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001353144.2",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1826A>G",
          "hgvs_p": "p.Glu609Gly",
          "transcript": "NM_017679.5",
          "protein_id": "NP_060149.3",
          "transcript_support_level": null,
          "aa_start": 609,
          "aa_end": null,
          "aa_length": 913,
          "cds_start": 1826,
          "cds_end": null,
          "cds_length": 2742,
          "cdna_start": 1895,
          "cdna_end": null,
          "cdna_length": 3517,
          "mane_select": "ENST00000407086.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_017679.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1826A>G",
          "hgvs_p": "p.Glu609Gly",
          "transcript": "ENST00000407086.8",
          "protein_id": "ENSP00000385323.2",
          "transcript_support_level": 1,
          "aa_start": 609,
          "aa_end": null,
          "aa_length": 913,
          "cds_start": 1826,
          "cds_end": null,
          "cds_length": 2742,
          "cdna_start": 1895,
          "cdna_end": null,
          "cdna_length": 3517,
          "mane_select": "NM_017679.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000407086.8"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1871A>G",
          "hgvs_p": "p.Glu624Gly",
          "transcript": "ENST00000390652.9",
          "protein_id": "ENSP00000375067.4",
          "transcript_support_level": 1,
          "aa_start": 624,
          "aa_end": null,
          "aa_length": 928,
          "cds_start": 1871,
          "cds_end": null,
          "cds_length": 2787,
          "cdna_start": 1902,
          "cdna_end": null,
          "cdna_length": 3531,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000390652.9"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1826A>G",
          "hgvs_p": "p.Glu609Gly",
          "transcript": "ENST00000589222.5",
          "protein_id": "ENSP00000466078.1",
          "transcript_support_level": 1,
          "aa_start": 609,
          "aa_end": null,
          "aa_length": 928,
          "cds_start": 1826,
          "cds_end": null,
          "cds_length": 2787,
          "cdna_start": 1894,
          "cdna_end": null,
          "cdna_length": 3673,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000589222.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1961A>G",
          "hgvs_p": "p.Glu654Gly",
          "transcript": "NM_001353144.2",
          "protein_id": "NP_001340073.1",
          "transcript_support_level": null,
          "aa_start": 654,
          "aa_end": null,
          "aa_length": 958,
          "cds_start": 1961,
          "cds_end": null,
          "cds_length": 2877,
          "cdna_start": 2030,
          "cdna_end": null,
          "cdna_length": 3652,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353144.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1871A>G",
          "hgvs_p": "p.Glu624Gly",
          "transcript": "NM_001330413.2",
          "protein_id": "NP_001317342.1",
          "transcript_support_level": null,
          "aa_start": 624,
          "aa_end": null,
          "aa_length": 950,
          "cds_start": 1871,
          "cds_end": null,
          "cds_length": 2853,
          "cdna_start": 1940,
          "cdna_end": null,
          "cdna_length": 3628,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001330413.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1871A>G",
          "hgvs_p": "p.Glu624Gly",
          "transcript": "ENST00000588462.5",
          "protein_id": "ENSP00000468592.1",
          "transcript_support_level": 5,
          "aa_start": 624,
          "aa_end": null,
          "aa_length": 950,
          "cds_start": 1871,
          "cds_end": null,
          "cds_length": 2853,
          "cdna_start": 1871,
          "cdna_end": null,
          "cdna_length": 3559,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000588462.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1916A>G",
          "hgvs_p": "p.Glu639Gly",
          "transcript": "NM_001353145.2",
          "protein_id": "NP_001340074.1",
          "transcript_support_level": null,
          "aa_start": 639,
          "aa_end": null,
          "aa_length": 943,
          "cds_start": 1916,
          "cds_end": null,
          "cds_length": 2832,
          "cdna_start": 1985,
          "cdna_end": null,
          "cdna_length": 3607,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353145.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1826A>G",
          "hgvs_p": "p.Glu609Gly",
          "transcript": "NM_001330414.2",
          "protein_id": "NP_001317343.1",
          "transcript_support_level": null,
          "aa_start": 609,
          "aa_end": null,
          "aa_length": 935,
          "cds_start": 1826,
          "cds_end": null,
          "cds_length": 2808,
          "cdna_start": 1895,
          "cdna_end": null,
          "cdna_length": 3583,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001330414.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1826A>G",
          "hgvs_p": "p.Glu609Gly",
          "transcript": "ENST00000408905.7",
          "protein_id": "ENSP00000386173.2",
          "transcript_support_level": 5,
          "aa_start": 609,
          "aa_end": null,
          "aa_length": 935,
          "cds_start": 1826,
          "cds_end": null,
          "cds_length": 2808,
          "cdna_start": 1826,
          "cdna_end": null,
          "cdna_length": 3514,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000408905.7"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1871A>G",
          "hgvs_p": "p.Glu624Gly",
          "transcript": "NM_001099432.3",
          "protein_id": "NP_001092902.1",
          "transcript_support_level": null,
          "aa_start": 624,
          "aa_end": null,
          "aa_length": 928,
          "cds_start": 1871,
          "cds_end": null,
          "cds_length": 2787,
          "cdna_start": 1940,
          "cdna_end": null,
          "cdna_length": 3562,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001099432.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1826A>G",
          "hgvs_p": "p.Glu609Gly",
          "transcript": "NM_001320470.3",
          "protein_id": "NP_001307399.1",
          "transcript_support_level": null,
          "aa_start": 609,
          "aa_end": null,
          "aa_length": 928,
          "cds_start": 1826,
          "cds_end": null,
          "cds_length": 2787,
          "cdna_start": 1895,
          "cdna_end": null,
          "cdna_length": 3674,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320470.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1871A>G",
          "hgvs_p": "p.Glu624Gly",
          "transcript": "NM_001353146.2",
          "protein_id": "NP_001340075.1",
          "transcript_support_level": null,
          "aa_start": 624,
          "aa_end": null,
          "aa_length": 921,
          "cds_start": 1871,
          "cds_end": null,
          "cds_length": 2766,
          "cdna_start": 1940,
          "cdna_end": null,
          "cdna_length": 3653,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353146.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1184A>G",
          "hgvs_p": "p.Glu395Gly",
          "transcript": "ENST00000585744.5",
          "protein_id": "ENSP00000468682.1",
          "transcript_support_level": 5,
          "aa_start": 395,
          "aa_end": null,
          "aa_length": 699,
          "cds_start": 1184,
          "cds_end": null,
          "cds_length": 2100,
          "cdna_start": 1287,
          "cdna_end": null,
          "cdna_length": 2203,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000585744.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "c.1139A>G",
          "hgvs_p": "p.Glu380Gly",
          "transcript": "ENST00000588874.5",
          "protein_id": "ENSP00000464825.1",
          "transcript_support_level": 2,
          "aa_start": 380,
          "aa_end": null,
          "aa_length": 684,
          "cds_start": 1139,
          "cds_end": null,
          "cds_length": 2055,
          "cdna_start": 1327,
          "cdna_end": null,
          "cdna_length": 2948,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000588874.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "n.304A>G",
          "hgvs_p": null,
          "transcript": "ENST00000585979.5",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 919,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000585979.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3",
          "gene_hgnc_id": 14347,
          "hgvs_c": "n.302A>G",
          "hgvs_p": null,
          "transcript": "ENST00000592827.1",
          "protein_id": null,
          "transcript_support_level": 4,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 569,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000592827.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3-AS1",
          "gene_hgnc_id": 56376,
          "hgvs_c": "n.298-1568T>C",
          "hgvs_p": null,
          "transcript": "ENST00000588604.2",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 733,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000588604.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3-AS1",
          "gene_hgnc_id": 56376,
          "hgvs_c": "n.424-1568T>C",
          "hgvs_p": null,
          "transcript": "ENST00000717192.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 954,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000717192.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "BCAS3-AS1",
          "gene_hgnc_id": 56376,
          "hgvs_c": "n.275-3178T>C",
          "hgvs_p": null,
          "transcript": "ENST00000821413.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 633,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000821413.1"
        },
        {
          "aa_ref": null,
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      "splice_source_selected": "max_spliceai",
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      "acmg_by_gene": [
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          "verdict": "Uncertain_significance",
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          "transcript": "NR_186505.1",
          "gene_symbol": "BCAS3-AS1",
          "hgnc_id": 56376,
          "effects": [
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          "inheritance_mode": "",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.