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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-63434518-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=63434518&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "17",
      "pos": 63434518,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001330421.2",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "NM_001915.4",
          "protein_id": "NP_001906.3",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000360793.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001915.4"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000360793.8",
          "protein_id": "ENSP00000354028.3",
          "transcript_support_level": 1,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001915.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000360793.8"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.799G>A",
          "hgvs_p": "p.Ala267Thr",
          "transcript": "ENST00000580691.5",
          "protein_id": "ENSP00000462545.1",
          "transcript_support_level": 1,
          "aa_start": 267,
          "aa_end": null,
          "aa_length": 304,
          "cds_start": 799,
          "cds_end": null,
          "cds_length": 915,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000580691.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000392975.6",
          "protein_id": "ENSP00000376701.2",
          "transcript_support_level": 1,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000392975.6"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000581573.5",
          "protein_id": "ENSP00000462325.1",
          "transcript_support_level": 1,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000581573.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.841G>A",
          "hgvs_p": "p.Ala281Thr",
          "transcript": "ENST00000542042.5",
          "protein_id": "ENSP00000442773.1",
          "transcript_support_level": 2,
          "aa_start": 281,
          "aa_end": null,
          "aa_length": 318,
          "cds_start": 841,
          "cds_end": null,
          "cds_length": 957,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000542042.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.661G>A",
          "hgvs_p": "p.Ala221Thr",
          "transcript": "NM_001330421.2",
          "protein_id": "NP_001317350.1",
          "transcript_support_level": null,
          "aa_start": 221,
          "aa_end": null,
          "aa_length": 258,
          "cds_start": 661,
          "cds_end": null,
          "cds_length": 777,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001330421.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.661G>A",
          "hgvs_p": "p.Ala221Thr",
          "transcript": "ENST00000582997.5",
          "protein_id": "ENSP00000464215.1",
          "transcript_support_level": 5,
          "aa_start": 221,
          "aa_end": null,
          "aa_length": 258,
          "cds_start": 661,
          "cds_end": null,
          "cds_length": 777,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000582997.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "NM_001017916.2",
          "protein_id": "NP_001017916.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001017916.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "NM_001017917.2",
          "protein_id": "NP_001017917.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001017917.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000392976.5",
          "protein_id": "ENSP00000376702.1",
          "transcript_support_level": 3,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000392976.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886026.1",
          "protein_id": "ENSP00000556085.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886026.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886027.1",
          "protein_id": "ENSP00000556086.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886027.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886028.1",
          "protein_id": "ENSP00000556087.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886028.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886029.1",
          "protein_id": "ENSP00000556088.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886029.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886030.1",
          "protein_id": "ENSP00000556089.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886030.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886031.1",
          "protein_id": "ENSP00000556090.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886031.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886032.1",
          "protein_id": "ENSP00000556091.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886032.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000886033.1",
          "protein_id": "ENSP00000556092.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886033.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYB561",
          "gene_hgnc_id": 2571,
          "hgvs_c": "c.640G>A",
          "hgvs_p": "p.Ala214Thr",
          "transcript": "ENST00000963328.1",
          "protein_id": "ENSP00000633387.1",
          "transcript_support_level": null,
          "aa_start": 214,
          "aa_end": null,
          "aa_length": 251,
          "cds_start": 640,
          "cds_end": null,
          "cds_length": 756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000963328.1"
        },
        {
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        {
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          "gene_symbol": "CYB561",
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          "transcript": "ENST00000581163.5",
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          "biotype": "pseudogene",
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        },
        {
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          "consequences": [
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          ],
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          "gene_symbol": "CYB561",
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          "hgvs_c": "n.391G>A",
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          "transcript": "ENST00000582143.1",
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          "biotype": "retained_intron",
          "feature": "ENST00000582143.1"
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      ],
      "gene_symbol": "CYB561",
      "gene_hgnc_id": 2571,
      "dbsnp": "rs369317453",
      "frequency_reference_population": 0.000044624594,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 72,
      "gnomad_exomes_af": 0.0000301114,
      "gnomad_genomes_af": 0.000183944,
      "gnomad_exomes_ac": 44,
      "gnomad_genomes_ac": 28,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.046648889780044556,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.085,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0712,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.4,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.762,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -4,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Strong",
      "acmg_by_gene": [
        {
          "score": -4,
          "benign_score": 4,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_001330421.2",
          "gene_symbol": "CYB561",
          "hgnc_id": 2571,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.661G>A",
          "hgvs_p": "p.Ala221Thr"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}