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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-67341042-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=67341042&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 67341042,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "ENST00000356126.8",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "c.1172C>G",
"hgvs_p": "p.Ala391Gly",
"transcript": "NM_002816.5",
"protein_id": "NP_002807.1",
"transcript_support_level": null,
"aa_start": 391,
"aa_end": null,
"aa_length": 456,
"cds_start": 1172,
"cds_end": null,
"cds_length": 1371,
"cdna_start": 1230,
"cdna_end": null,
"cdna_length": 4356,
"mane_select": "ENST00000356126.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "c.1172C>G",
"hgvs_p": "p.Ala391Gly",
"transcript": "ENST00000356126.8",
"protein_id": "ENSP00000348442.3",
"transcript_support_level": 1,
"aa_start": 391,
"aa_end": null,
"aa_length": 456,
"cds_start": 1172,
"cds_end": null,
"cds_length": 1371,
"cdna_start": 1230,
"cdna_end": null,
"cdna_length": 4356,
"mane_select": "NM_002816.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "n.*1327C>G",
"hgvs_p": null,
"transcript": "ENST00000584008.5",
"protein_id": "ENSP00000462525.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1752,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "n.*1327C>G",
"hgvs_p": null,
"transcript": "ENST00000584008.5",
"protein_id": "ENSP00000462525.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1752,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "c.1112C>G",
"hgvs_p": "p.Ala371Gly",
"transcript": "NM_174871.4",
"protein_id": "NP_777360.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 436,
"cds_start": 1112,
"cds_end": null,
"cds_length": 1311,
"cdna_start": 1170,
"cdna_end": null,
"cdna_length": 4296,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "c.1112C>G",
"hgvs_p": "p.Ala371Gly",
"transcript": "ENST00000357146.4",
"protein_id": "ENSP00000349667.4",
"transcript_support_level": 2,
"aa_start": 371,
"aa_end": null,
"aa_length": 436,
"cds_start": 1112,
"cds_end": null,
"cds_length": 1311,
"cdna_start": 1198,
"cdna_end": null,
"cdna_length": 2437,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "A",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "c.995C>G",
"hgvs_p": "p.Ala332Gly",
"transcript": "NM_001316341.2",
"protein_id": "NP_001303270.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 397,
"cds_start": 995,
"cds_end": null,
"cds_length": 1194,
"cdna_start": 1514,
"cdna_end": null,
"cdna_length": 4640,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"hgvs_c": "n.310C>G",
"hgvs_p": null,
"transcript": "ENST00000577724.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 377,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "PSMD12",
"gene_hgnc_id": 9557,
"dbsnp": null,
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.23873290419578552,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.059,
"revel_prediction": "Benign",
"alphamissense_score": 0.17,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.48,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 6.64,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000356126.8",
"gene_symbol": "PSMD12",
"hgnc_id": 9557,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.1172C>G",
"hgvs_p": "p.Ala391Gly"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}