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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-75627471-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=75627471&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 75627471,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_004259.7",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2927G>A",
"hgvs_p": "p.Arg976Gln",
"transcript": "NM_004259.7",
"protein_id": "NP_004250.4",
"transcript_support_level": null,
"aa_start": 976,
"aa_end": null,
"aa_length": 991,
"cds_start": 2927,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000317905.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_004259.7"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2927G>A",
"hgvs_p": "p.Arg976Gln",
"transcript": "ENST00000317905.10",
"protein_id": "ENSP00000317636.5",
"transcript_support_level": 1,
"aa_start": 976,
"aa_end": null,
"aa_length": 991,
"cds_start": 2927,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_004259.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000317905.10"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2846G>A",
"hgvs_p": "p.Arg949Gln",
"transcript": "ENST00000423245.6",
"protein_id": "ENSP00000394820.2",
"transcript_support_level": 1,
"aa_start": 949,
"aa_end": null,
"aa_length": 964,
"cds_start": 2846,
"cds_end": null,
"cds_length": 2895,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000423245.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "n.2463G>A",
"hgvs_p": null,
"transcript": "ENST00000443199.6",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000443199.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "n.550G>A",
"hgvs_p": null,
"transcript": "ENST00000578865.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000578865.5"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2927G>A",
"hgvs_p": "p.Arg976Gln",
"transcript": "ENST00000919295.1",
"protein_id": "ENSP00000589354.1",
"transcript_support_level": null,
"aa_start": 976,
"aa_end": null,
"aa_length": 991,
"cds_start": 2927,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919295.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2927G>A",
"hgvs_p": "p.Arg976Gln",
"transcript": "ENST00000919296.1",
"protein_id": "ENSP00000589355.1",
"transcript_support_level": null,
"aa_start": 976,
"aa_end": null,
"aa_length": 991,
"cds_start": 2927,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919296.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2924G>A",
"hgvs_p": "p.Arg975Gln",
"transcript": "ENST00000941132.1",
"protein_id": "ENSP00000611191.1",
"transcript_support_level": null,
"aa_start": 975,
"aa_end": null,
"aa_length": 990,
"cds_start": 2924,
"cds_end": null,
"cds_length": 2973,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000941132.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2873G>A",
"hgvs_p": "p.Arg958Gln",
"transcript": "ENST00000910739.1",
"protein_id": "ENSP00000580798.1",
"transcript_support_level": null,
"aa_start": 958,
"aa_end": null,
"aa_length": 973,
"cds_start": 2873,
"cds_end": null,
"cds_length": 2922,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910739.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2792G>A",
"hgvs_p": "p.Arg931Gln",
"transcript": "ENST00000941133.1",
"protein_id": "ENSP00000611192.1",
"transcript_support_level": null,
"aa_start": 931,
"aa_end": null,
"aa_length": 946,
"cds_start": 2792,
"cds_end": null,
"cds_length": 2841,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000941133.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2591G>A",
"hgvs_p": "p.Arg864Gln",
"transcript": "ENST00000919294.1",
"protein_id": "ENSP00000589353.1",
"transcript_support_level": null,
"aa_start": 864,
"aa_end": null,
"aa_length": 879,
"cds_start": 2591,
"cds_end": null,
"cds_length": 2640,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919294.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2528G>A",
"hgvs_p": "p.Arg843Gln",
"transcript": "ENST00000910741.1",
"protein_id": "ENSP00000580800.1",
"transcript_support_level": null,
"aa_start": 843,
"aa_end": null,
"aa_length": 858,
"cds_start": 2528,
"cds_end": null,
"cds_length": 2577,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910741.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2129G>A",
"hgvs_p": "p.Arg710Gln",
"transcript": "ENST00000910740.1",
"protein_id": "ENSP00000580799.1",
"transcript_support_level": null,
"aa_start": 710,
"aa_end": null,
"aa_length": 725,
"cds_start": 2129,
"cds_end": null,
"cds_length": 2178,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910740.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2990G>A",
"hgvs_p": "p.Arg997Gln",
"transcript": "XM_005257818.5",
"protein_id": "XP_005257875.1",
"transcript_support_level": null,
"aa_start": 997,
"aa_end": null,
"aa_length": 1012,
"cds_start": 2990,
"cds_end": null,
"cds_length": 3039,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005257818.5"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.2927G>A",
"hgvs_p": "p.Arg976Gln",
"transcript": "XM_047437085.1",
"protein_id": "XP_047293041.1",
"transcript_support_level": null,
"aa_start": 976,
"aa_end": null,
"aa_length": 991,
"cds_start": 2927,
"cds_end": null,
"cds_length": 2976,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437085.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.1853G>A",
"hgvs_p": "p.Arg618Gln",
"transcript": "XM_047437086.1",
"protein_id": "XP_047293042.1",
"transcript_support_level": null,
"aa_start": 618,
"aa_end": null,
"aa_length": 633,
"cds_start": 1853,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437086.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.1853G>A",
"hgvs_p": "p.Arg618Gln",
"transcript": "XM_047437087.1",
"protein_id": "XP_047293043.1",
"transcript_support_level": null,
"aa_start": 618,
"aa_end": null,
"aa_length": 633,
"cds_start": 1853,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437087.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.1808G>A",
"hgvs_p": "p.Arg603Gln",
"transcript": "XM_011525484.2",
"protein_id": "XP_011523786.1",
"transcript_support_level": null,
"aa_start": 603,
"aa_end": null,
"aa_length": 618,
"cds_start": 1808,
"cds_end": null,
"cds_length": 1857,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011525484.2"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.1790G>A",
"hgvs_p": "p.Arg597Gln",
"transcript": "XM_011525485.3",
"protein_id": "XP_011523787.1",
"transcript_support_level": null,
"aa_start": 597,
"aa_end": null,
"aa_length": 612,
"cds_start": 1790,
"cds_end": null,
"cds_length": 1839,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011525485.3"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.1790G>A",
"hgvs_p": "p.Arg597Gln",
"transcript": "XM_047437088.1",
"protein_id": "XP_047293044.1",
"transcript_support_level": null,
"aa_start": 597,
"aa_end": null,
"aa_length": 612,
"cds_start": 1790,
"cds_end": null,
"cds_length": 1839,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437088.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.1775G>A",
"hgvs_p": "p.Arg592Gln",
"transcript": "XM_006722186.2",
"protein_id": "XP_006722249.1",
"transcript_support_level": null,
"aa_start": 592,
"aa_end": null,
"aa_length": 607,
"cds_start": 1775,
"cds_end": null,
"cds_length": 1824,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006722186.2"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RECQL5",
"gene_hgnc_id": 9950,
"hgvs_c": "c.1745G>A",
"hgvs_p": "p.Arg582Gln",
"transcript": "XM_047437089.1",
"protein_id": "XP_047293045.1",
"transcript_support_level": null,
"aa_start": 582,
"aa_end": null,
"aa_length": 597,
"cds_start": 1745,
"cds_end": null,
"cds_length": 1794,
"cdna_start": null,
"cdna_end": null,
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{
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{
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{
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"feature": "XM_011525486.3"
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{
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],
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"gene_symbol": "RECQL5",
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"transcript": "ENST00000581825.1",
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"biotype": "protein_coding",
"feature": "ENST00000581825.1"
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],
"gene_symbol": "RECQL5",
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"dbsnp": "rs780872873",
"frequency_reference_population": 0.000019211224,
"hom_count_reference_population": 0,
"allele_count_reference_population": 31,
"gnomad_exomes_af": 0.0000184744,
"gnomad_genomes_af": 0.0000262878,
"gnomad_exomes_ac": 27,
"gnomad_genomes_ac": 4,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.3453125059604645,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.12,
"revel_prediction": "Benign",
"alphamissense_score": 0.1113,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.34,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.346,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -1,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4",
"acmg_by_gene": [
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BP4"
],
"verdict": "Likely_benign",
"transcript": "NM_004259.7",
"gene_symbol": "RECQL5",
"hgnc_id": 9950,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.2927G>A",
"hgvs_p": "p.Arg976Gln"
}
],
"clinvar_disease": "RECQL5-related disorder",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "RECQL5-related disorder",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}