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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-76386445-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=76386445&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 4,
          "criteria": [
            "PP3_Moderate",
            "BS2"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "SPHK1",
          "hgnc_id": 11240,
          "hgvs_c": "c.569C>T",
          "hgvs_p": "p.Pro190Leu",
          "inheritance_mode": "AD",
          "pathogenic_score": 2,
          "score": -2,
          "transcript": "NM_182965.3",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PP3_Moderate,BS2",
      "acmg_score": -2,
      "allele_count_reference_population": 25,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.3545,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "bayesdelnoaf_score": -0.08,
      "chr": "17",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.915635347366333,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1816,
          "cdna_start": 703,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001142601.2",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000592299.6",
          "protein_coding": true,
          "protein_id": "NP_001136073.1",
          "strand": true,
          "transcript": "NM_001142601.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1816,
          "cdna_start": 703,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000592299.6",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001142601.2",
          "protein_coding": true,
          "protein_id": "ENSP00000465726.2",
          "strand": true,
          "transcript": "ENST00000592299.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 470,
          "aa_ref": "P",
          "aa_start": 190,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2138,
          "cdna_start": 1025,
          "cds_end": null,
          "cds_length": 1413,
          "cds_start": 569,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000323374.8",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.569C>T",
          "hgvs_p": "p.Pro190Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000313681.3",
          "strand": true,
          "transcript": "ENST00000323374.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 398,
          "aa_ref": "P",
          "aa_start": 118,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1851,
          "cdna_start": 733,
          "cds_end": null,
          "cds_length": 1197,
          "cds_start": 353,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000590959.5",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.353C>T",
          "hgvs_p": "p.Pro118Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000468547.1",
          "strand": true,
          "transcript": "ENST00000590959.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1779,
          "cdna_start": 664,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000392496.3",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000376285.2",
          "strand": true,
          "transcript": "ENST00000392496.3",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 470,
          "aa_ref": "P",
          "aa_start": 190,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2179,
          "cdna_start": 1066,
          "cds_end": null,
          "cds_length": 1413,
          "cds_start": 569,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_182965.3",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.569C>T",
          "hgvs_p": "p.Pro190Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_892010.2",
          "strand": true,
          "transcript": "NM_182965.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 398,
          "aa_ref": "P",
          "aa_start": 118,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1858,
          "cdna_start": 745,
          "cds_end": null,
          "cds_length": 1197,
          "cds_start": 353,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_021972.4",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.353C>T",
          "hgvs_p": "p.Pro118Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_068807.2",
          "strand": true,
          "transcript": "NM_021972.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 398,
          "aa_ref": "P",
          "aa_start": 118,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2191,
          "cdna_start": 1079,
          "cds_end": null,
          "cds_length": 1197,
          "cds_start": 353,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000960428.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.353C>T",
          "hgvs_p": "p.Pro118Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630487.1",
          "strand": true,
          "transcript": "ENST00000960428.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1791,
          "cdna_start": 678,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001142602.2",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001136074.1",
          "strand": true,
          "transcript": "NM_001142602.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1944,
          "cdna_start": 831,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001355139.2",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001342068.1",
          "strand": true,
          "transcript": "NM_001355139.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2238,
          "cdna_start": 1120,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000545180.5",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000440970.1",
          "strand": true,
          "transcript": "ENST00000545180.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1782,
          "cdna_start": 664,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000889756.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559815.1",
          "strand": true,
          "transcript": "ENST00000889756.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1752,
          "cdna_start": 639,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000889758.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559817.1",
          "strand": true,
          "transcript": "ENST00000889758.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1989,
          "cdna_start": 872,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000889759.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559818.1",
          "strand": true,
          "transcript": "ENST00000889759.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1710,
          "cdna_start": 597,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000889760.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559819.1",
          "strand": true,
          "transcript": "ENST00000889760.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1744,
          "cdna_start": 631,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000889761.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559820.1",
          "strand": true,
          "transcript": "ENST00000889761.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 384,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1765,
          "cdna_start": 653,
          "cds_end": null,
          "cds_length": 1155,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000960427.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.311C>T",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630486.1",
          "strand": true,
          "transcript": "ENST00000960427.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 377,
          "aa_ref": "P",
          "aa_start": 97,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1689,
          "cdna_start": 576,
          "cds_end": null,
          "cds_length": 1134,
          "cds_start": 290,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000889757.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.290C>T",
          "hgvs_p": "p.Pro97Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559816.1",
          "strand": true,
          "transcript": "ENST00000889757.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 377,
          "aa_ref": "P",
          "aa_start": 97,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1732,
          "cdna_start": 620,
          "cds_end": null,
          "cds_length": 1134,
          "cds_start": 290,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000960429.1",
          "gene_hgnc_id": 11240,
          "gene_symbol": "SPHK1",
          "hgvs_c": "c.290C>T",
          "hgvs_p": "p.Pro97Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.