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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-7832924-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=7832924&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 7832924,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000572933.6",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 84,
"exon_rank_end": null,
"exon_count": 86,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.12974C>T",
"hgvs_p": "p.Pro4325Leu",
"transcript": "NM_020877.5",
"protein_id": "NP_065928.2",
"transcript_support_level": null,
"aa_start": 4325,
"aa_end": null,
"aa_length": 4427,
"cds_start": 12974,
"cds_end": null,
"cds_length": 13284,
"cdna_start": 14044,
"cdna_end": null,
"cdna_length": 14563,
"mane_select": "ENST00000572933.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 84,
"exon_rank_end": null,
"exon_count": 86,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.12974C>T",
"hgvs_p": "p.Pro4325Leu",
"transcript": "ENST00000572933.6",
"protein_id": "ENSP00000458355.1",
"transcript_support_level": 2,
"aa_start": 4325,
"aa_end": null,
"aa_length": 4427,
"cds_start": 12974,
"cds_end": null,
"cds_length": 13284,
"cdna_start": 14044,
"cdna_end": null,
"cdna_length": 14563,
"mane_select": "NM_020877.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 83,
"exon_rank_end": null,
"exon_count": 85,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.12974C>T",
"hgvs_p": "p.Pro4325Leu",
"transcript": "ENST00000389173.6",
"protein_id": "ENSP00000373825.2",
"transcript_support_level": 2,
"aa_start": 4325,
"aa_end": null,
"aa_length": 4427,
"cds_start": 12974,
"cds_end": null,
"cds_length": 13284,
"cdna_start": 12988,
"cdna_end": null,
"cdna_length": 13505,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 86,
"exon_rank_end": null,
"exon_count": 88,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.13220C>T",
"hgvs_p": "p.Pro4407Leu",
"transcript": "XM_011523663.2",
"protein_id": "XP_011521965.1",
"transcript_support_level": null,
"aa_start": 4407,
"aa_end": null,
"aa_length": 4509,
"cds_start": 13220,
"cds_end": null,
"cds_length": 13530,
"cdna_start": 13322,
"cdna_end": null,
"cdna_length": 13841,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 87,
"exon_rank_end": null,
"exon_count": 89,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.13220C>T",
"hgvs_p": "p.Pro4407Leu",
"transcript": "XM_047435424.1",
"protein_id": "XP_047291380.1",
"transcript_support_level": null,
"aa_start": 4407,
"aa_end": null,
"aa_length": 4509,
"cds_start": 13220,
"cds_end": null,
"cds_length": 13530,
"cdna_start": 13458,
"cdna_end": null,
"cdna_length": 13977,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 85,
"exon_rank_end": null,
"exon_count": 87,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.13031C>T",
"hgvs_p": "p.Pro4344Leu",
"transcript": "XM_047435425.1",
"protein_id": "XP_047291381.1",
"transcript_support_level": null,
"aa_start": 4344,
"aa_end": null,
"aa_length": 4446,
"cds_start": 13031,
"cds_end": null,
"cds_length": 13341,
"cdna_start": 13133,
"cdna_end": null,
"cdna_length": 13652,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 85,
"exon_rank_end": null,
"exon_count": 87,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.12974C>T",
"hgvs_p": "p.Pro4325Leu",
"transcript": "XM_011523667.3",
"protein_id": "XP_011521969.1",
"transcript_support_level": null,
"aa_start": 4325,
"aa_end": null,
"aa_length": 4427,
"cds_start": 12974,
"cds_end": null,
"cds_length": 13284,
"cdna_start": 13212,
"cdna_end": null,
"cdna_length": 13731,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 76,
"exon_rank_end": null,
"exon_count": 78,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.11612C>T",
"hgvs_p": "p.Pro3871Leu",
"transcript": "XM_047435426.1",
"protein_id": "XP_047291382.1",
"transcript_support_level": null,
"aa_start": 3871,
"aa_end": null,
"aa_length": 3973,
"cds_start": 11612,
"cds_end": null,
"cds_length": 11922,
"cdna_start": 11684,
"cdna_end": null,
"cdna_length": 12203,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 73,
"exon_rank_end": null,
"exon_count": 75,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.11225C>T",
"hgvs_p": "p.Pro3742Leu",
"transcript": "XM_047435427.1",
"protein_id": "XP_047291383.1",
"transcript_support_level": null,
"aa_start": 3742,
"aa_end": null,
"aa_length": 3844,
"cds_start": 11225,
"cds_end": null,
"cds_length": 11535,
"cdna_start": 11387,
"cdna_end": null,
"cdna_length": 11906,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 74,
"exon_rank_end": null,
"exon_count": 76,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"hgvs_c": "c.11216C>T",
"hgvs_p": "p.Pro3739Leu",
"transcript": "XM_047435428.1",
"protein_id": "XP_047291384.1",
"transcript_support_level": null,
"aa_start": 3739,
"aa_end": null,
"aa_length": 3841,
"cds_start": 11216,
"cds_end": null,
"cds_length": 11526,
"cdna_start": 11370,
"cdna_end": null,
"cdna_length": 11889,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "DNAH2",
"gene_hgnc_id": 2948,
"dbsnp": "rs116930996",
"frequency_reference_population": 0.000005472413,
"hom_count_reference_population": 0,
"allele_count_reference_population": 8,
"gnomad_exomes_af": 0.00000547241,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 8,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.6645572781562805,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.279,
"revel_prediction": "Benign",
"alphamissense_score": 0.686,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.37,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 6.603,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000572933.6",
"gene_symbol": "DNAH2",
"hgnc_id": 2948,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.12974C>T",
"hgvs_p": "p.Pro4325Leu"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}