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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 17-80181550-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=80181550&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "17",
"pos": 80181550,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "ENST00000648509.2",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "NM_001366385.1",
"protein_id": "NP_001353314.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 828,
"cdna_end": null,
"cdna_length": 4717,
"mane_select": "ENST00000648509.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "ENST00000648509.2",
"protein_id": "ENSP00000498071.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 828,
"cdna_end": null,
"cdna_length": 4717,
"mane_select": "NM_001366385.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "ENST00000344227.6",
"protein_id": "ENSP00000344549.2",
"transcript_support_level": 1,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 280,
"cdna_end": null,
"cdna_length": 4147,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "ENST00000570421.5",
"protein_id": "ENSP00000461806.1",
"transcript_support_level": 1,
"aa_start": 38,
"aa_end": null,
"aa_length": 740,
"cds_start": 112,
"cds_end": null,
"cds_length": 2223,
"cdna_start": 289,
"cdna_end": null,
"cdna_length": 2607,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "ENST00000651672.1",
"protein_id": "ENSP00000499145.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1013,
"cds_start": 112,
"cds_end": null,
"cds_length": 3042,
"cdna_start": 560,
"cdna_end": null,
"cdna_length": 4475,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "NM_024110.4",
"protein_id": "NP_077015.2",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 280,
"cdna_end": null,
"cdna_length": 4169,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "ENST00000571427.2",
"protein_id": "ENSP00000516501.1",
"transcript_support_level": 5,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 843,
"cdna_end": null,
"cdna_length": 4732,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "ENST00000573882.5",
"protein_id": "ENSP00000458715.1",
"transcript_support_level": 5,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 648,
"cdna_end": null,
"cdna_length": 4537,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "NM_001257970.1",
"protein_id": "NP_001244899.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 740,
"cds_start": 112,
"cds_end": null,
"cds_length": 2223,
"cdna_start": 280,
"cdna_end": null,
"cdna_length": 2598,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "ENST00000575465.6",
"protein_id": "ENSP00000459244.2",
"transcript_support_level": 5,
"aa_start": 38,
"aa_end": null,
"aa_length": 69,
"cds_start": 112,
"cds_end": null,
"cds_length": 211,
"cdna_start": 483,
"cdna_end": null,
"cdna_length": 582,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_011525213.2",
"protein_id": "XP_011523515.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 505,
"cdna_end": null,
"cdna_length": 4394,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_011525216.2",
"protein_id": "XP_011523518.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 307,
"cdna_end": null,
"cdna_length": 4196,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_011525218.2",
"protein_id": "XP_011523520.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 342,
"cdna_end": null,
"cdna_length": 4231,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436713.1",
"protein_id": "XP_047292669.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
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"cdna_start": 585,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436714.1",
"protein_id": "XP_047292670.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 567,
"cdna_end": null,
"cdna_length": 4456,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436715.1",
"protein_id": "XP_047292671.1",
"transcript_support_level": null,
"aa_start": 38,
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"cdna_start": 603,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436716.1",
"protein_id": "XP_047292672.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 487,
"cdna_end": null,
"cdna_length": 4376,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436717.1",
"protein_id": "XP_047292673.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 1004,
"cds_start": 112,
"cds_end": null,
"cds_length": 3015,
"cdna_start": 783,
"cdna_end": null,
"cdna_length": 4672,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436718.1",
"protein_id": "XP_047292674.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
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"cds_start": 112,
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"feature": null
},
{
"aa_ref": "R",
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436719.1",
"protein_id": "XP_047292675.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 936,
"cds_start": 112,
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"cdna_start": 387,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436720.1",
"protein_id": "XP_047292676.1",
"transcript_support_level": null,
"aa_start": 38,
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"aa_length": 854,
"cds_start": 112,
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"cdna_start": 478,
"cdna_end": null,
"cdna_length": 3038,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436721.1",
"protein_id": "XP_047292677.1",
"transcript_support_level": null,
"aa_start": 38,
"aa_end": null,
"aa_length": 740,
"cds_start": 112,
"cds_end": null,
"cds_length": 2223,
"cdna_start": 478,
"cdna_end": null,
"cdna_length": 2796,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CARD14",
"gene_hgnc_id": 16446,
"hgvs_c": "c.112C>A",
"hgvs_p": "p.Arg38Ser",
"transcript": "XM_047436722.1",
"protein_id": "XP_047292678.1",
"transcript_support_level": null,
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}