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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 17-82240011-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=17&pos=82240011&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 9,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BS2"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "CSNK1D",
          "hgnc_id": 2452,
          "hgvs_c": "c.1249C>T",
          "hgvs_p": "p.Arg417Cys",
          "inheritance_mode": "AD",
          "pathogenic_score": 0,
          "score": -9,
          "transcript": "NM_001363749.2",
          "verdict": "Benign"
        },
        {
          "benign_score": 5,
          "criteria": [
            "BP4_Strong",
            "BP6"
          ],
          "effects": [
            "3_prime_UTR_variant"
          ],
          "gene_symbol": "SLC16A3",
          "hgnc_id": 10924,
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "inheritance_mode": "AR",
          "pathogenic_score": 0,
          "score": -5,
          "transcript": "NM_004207.4",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6,BS2",
      "acmg_score": -9,
      "allele_count_reference_population": 120,
      "alphamissense_prediction": "Benign",
      "alphamissense_score": 0.2278,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.43,
      "chr": "17",
      "clinvar_classification": "Likely benign",
      "clinvar_disease": "CSNK1D-related disorder",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.05028468370437622,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2599,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_004207.4",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000582743.6",
          "protein_coding": true,
          "protein_id": "NP_004198.1",
          "strand": true,
          "transcript": "NM_004207.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2599,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000582743.6",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_004207.4",
          "protein_coding": true,
          "protein_id": "ENSP00000462405.1",
          "strand": true,
          "transcript": "ENST00000582743.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4830,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000581287.5",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000463978.1",
          "strand": true,
          "transcript": "ENST00000581287.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 427,
          "aa_ref": "R",
          "aa_start": 417,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2560,
          "cdna_start": 1568,
          "cds_end": null,
          "cds_length": 1284,
          "cds_start": 1249,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NM_001363749.2",
          "gene_hgnc_id": 2452,
          "gene_symbol": "CSNK1D",
          "hgvs_c": "c.1249C>T",
          "hgvs_p": "p.Arg417Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001350678.1",
          "strand": false,
          "transcript": "NM_001363749.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 427,
          "aa_ref": "R",
          "aa_start": 417,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1580,
          "cdna_start": 1296,
          "cds_end": null,
          "cds_length": 1284,
          "cds_start": 1249,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000398519.9",
          "gene_hgnc_id": 2452,
          "gene_symbol": "CSNK1D",
          "hgvs_c": "c.1249C>T",
          "hgvs_p": "p.Arg417Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000381531.5",
          "strand": false,
          "transcript": "ENST00000398519.9",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2629,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001042422.3",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001035887.1",
          "strand": true,
          "transcript": "NM_001042422.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2662,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001042423.3",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001035888.1",
          "strand": true,
          "transcript": "NM_001042423.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2645,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001206950.2",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001193879.1",
          "strand": true,
          "transcript": "NM_001206950.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2636,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001206951.2",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001193880.1",
          "strand": true,
          "transcript": "NM_001206951.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2603,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001206952.2",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001193881.1",
          "strand": true,
          "transcript": "NM_001206952.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2662,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000392339.6",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000376150.1",
          "strand": true,
          "transcript": "ENST00000392339.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2659,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000392341.6",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000376152.1",
          "strand": true,
          "transcript": "ENST00000392341.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2711,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
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          "exon_rank_end": null,
          "feature": "ENST00000580189.6",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000464112.2",
          "strand": true,
          "transcript": "ENST00000580189.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2667,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000584689.6",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000464625.2",
          "strand": true,
          "transcript": "ENST00000584689.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2636,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000617373.5",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000483212.1",
          "strand": true,
          "transcript": "ENST00000617373.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2603,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000619321.2",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000482013.1",
          "strand": true,
          "transcript": "ENST00000619321.2",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 439,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2503,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1320,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 6,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000577650.6",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000463063.2",
          "strand": true,
          "transcript": "ENST00000577650.6",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 417,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2439,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1254,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000578684.6",
          "gene_hgnc_id": 10924,
          "gene_symbol": "SLC16A3",
          "hgvs_c": "c.*1035G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000463912.2",
          "strand": true,
          "transcript": "ENST00000578684.6",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 410,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2676,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1233,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.