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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 18-13734511-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=13734511&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "18",
      "pos": 13734511,
      "ref": "A",
      "alt": "G",
      "effect": "synonymous_variant",
      "transcript": "NM_001308263.2",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "NM_003799.3",
          "protein_id": "NP_003790.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 476,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1431,
          "cdna_start": 693,
          "cdna_end": null,
          "cdna_length": 6236,
          "mane_select": "ENST00000383314.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_003799.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000383314.7",
          "protein_id": "ENSP00000372804.2",
          "transcript_support_level": 1,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 476,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1431,
          "cdna_start": 693,
          "cdna_end": null,
          "cdna_length": 6236,
          "mane_select": "NM_003799.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000383314.7"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000543302.6",
          "protein_id": "ENSP00000446426.1",
          "transcript_support_level": 1,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 476,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1431,
          "cdna_start": 577,
          "cdna_end": null,
          "cdna_length": 1849,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000543302.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000589866.5",
          "protein_id": "ENSP00000466252.1",
          "transcript_support_level": 1,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 476,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1431,
          "cdna_start": 825,
          "cdna_end": null,
          "cdna_length": 1879,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000589866.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "NM_001308263.2",
          "protein_id": "NP_001295192.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 504,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1515,
          "cdna_start": 693,
          "cdna_end": null,
          "cdna_length": 4139,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001308263.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "NM_001378134.1",
          "protein_id": "NP_001365063.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 504,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1515,
          "cdna_start": 564,
          "cdna_end": null,
          "cdna_length": 4010,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001378134.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000592764.5",
          "protein_id": "ENSP00000466111.1",
          "transcript_support_level": 2,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 504,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1515,
          "cdna_start": 662,
          "cdna_end": null,
          "cdna_length": 4108,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000592764.5"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000907443.1",
          "protein_id": "ENSP00000577502.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 483,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1452,
          "cdna_start": 673,
          "cdna_end": null,
          "cdna_length": 2433,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000907443.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000916360.1",
          "protein_id": "ENSP00000586419.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 483,
          "cds_start": 465,
          "cds_end": null,
          "cds_length": 1452,
          "cdna_start": 556,
          "cdna_end": null,
          "cdna_length": 4206,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000916360.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "NM_001378135.1",
          "protein_id": "NP_001365064.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 476,
          "cds_start": 465,
          "cds_end": null,
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          "cdna_start": 564,
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          "cdna_length": 6107,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000262173.7",
          "protein_id": "ENSP00000262173.3",
          "transcript_support_level": 2,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 476,
          "cds_start": 465,
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          "cdna_start": 509,
          "cdna_end": null,
          "cdna_length": 6051,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000262173.7"
        },
        {
          "aa_ref": "E",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "RNMT",
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          "hgvs_c": "c.465A>G",
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          "protein_id": "ENSP00000577503.1",
          "transcript_support_level": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "E",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
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          "intron_rank": null,
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          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000907445.1",
          "protein_id": "ENSP00000577504.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000907445.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
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          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "ENST00000916361.1",
          "protein_id": "ENSP00000586420.1",
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        {
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          ],
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          "gene_symbol": "RNMT",
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          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
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          "protein_id": "XP_011524051.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_011525749.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 4,
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          "intron_rank": null,
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          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.465A>G",
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          "transcript": "XM_011525750.3",
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        },
        {
          "aa_ref": "E",
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          "gene_symbol": "RNMT",
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          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
          "transcript": "XM_011525751.2",
          "protein_id": "XP_011524053.1",
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        {
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          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
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          "transcript": "XM_047437907.1",
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        },
        {
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          "gene_symbol": "RNMT",
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          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.-70A>G",
          "hgvs_p": null,
          "transcript": "NM_001378132.1",
          "protein_id": "NP_001365061.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 298,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": 5777,
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          "biotype": "protein_coding",
          "feature": "NM_001378132.1"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
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          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "c.-70A>G",
          "hgvs_p": null,
          "transcript": "XM_011525753.3",
          "protein_id": "XP_011524055.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 334,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1005,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3884,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011525753.3"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNMT",
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          "hgvs_c": "n.-70A>G",
          "hgvs_p": null,
          "transcript": "ENST00000588457.5",
          "protein_id": "ENSP00000467171.1",
          "transcript_support_level": 2,
          "aa_start": null,
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          "cds_start": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1612,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000588457.5"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
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          "exon_rank": 4,
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          "exon_count": 13,
          "intron_rank": null,
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          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "n.693A>G",
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          "transcript": "NR_165427.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 4406,
          "mane_select": null,
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          "biotype": "pseudogene",
          "feature": "NR_165427.1"
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        {
          "aa_ref": null,
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
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          "exon_rank": 2,
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          "exon_count": 11,
          "intron_rank": null,
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          "gene_symbol": "RNMT",
          "gene_hgnc_id": 10075,
          "hgvs_c": "n.-70A>G",
          "hgvs_p": null,
          "transcript": "ENST00000588457.5",
          "protein_id": "ENSP00000467171.1",
          "transcript_support_level": 2,
          "aa_start": null,
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          "cds_start": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1612,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000588457.5"
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      ],
      "gene_symbol": "RNMT",
      "gene_hgnc_id": 10075,
      "dbsnp": "rs563526257",
      "frequency_reference_population": 0.00012455707,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 201,
      "gnomad_exomes_af": 0.000132067,
      "gnomad_genomes_af": 0.0000525141,
      "gnomad_exomes_ac": 193,
      "gnomad_genomes_ac": 8,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.5400000214576721,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.54,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -0.595,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -7,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Moderate,BP7",
      "acmg_by_gene": [
        {
          "score": -7,
          "benign_score": 7,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Moderate",
            "BP7"
          ],
          "verdict": "Benign",
          "transcript": "NM_001308263.2",
          "gene_symbol": "RNMT",
          "hgnc_id": 10075,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.465A>G",
          "hgvs_p": "p.Glu155Glu"
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "B:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Benign",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.