← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 18-32208211-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=32208211&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "18",
"pos": 32208211,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_005925.3",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEP1B",
"gene_hgnc_id": 7020,
"hgvs_c": "c.859C>T",
"hgvs_p": "p.Arg287Trp",
"transcript": "NM_005925.3",
"protein_id": "NP_005916.2",
"transcript_support_level": null,
"aa_start": 287,
"aa_end": null,
"aa_length": 701,
"cds_start": 859,
"cds_end": null,
"cds_length": 2106,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000269202.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005925.3"
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEP1B",
"gene_hgnc_id": 7020,
"hgvs_c": "c.859C>T",
"hgvs_p": "p.Arg287Trp",
"transcript": "ENST00000269202.11",
"protein_id": "ENSP00000269202.6",
"transcript_support_level": 1,
"aa_start": 287,
"aa_end": null,
"aa_length": 701,
"cds_start": 859,
"cds_end": null,
"cds_length": 2106,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_005925.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000269202.11"
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEP1B",
"gene_hgnc_id": 7020,
"hgvs_c": "c.859C>T",
"hgvs_p": "p.Arg287Trp",
"transcript": "ENST00000581447.1",
"protein_id": "ENSP00000463280.1",
"transcript_support_level": 1,
"aa_start": 287,
"aa_end": null,
"aa_length": 700,
"cds_start": 859,
"cds_end": null,
"cds_length": 2103,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000581447.1"
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEP1B",
"gene_hgnc_id": 7020,
"hgvs_c": "c.859C>T",
"hgvs_p": "p.Arg287Trp",
"transcript": "NM_001308171.2",
"protein_id": "NP_001295100.1",
"transcript_support_level": null,
"aa_start": 287,
"aa_end": null,
"aa_length": 700,
"cds_start": 859,
"cds_end": null,
"cds_length": 2103,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001308171.2"
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEP1B",
"gene_hgnc_id": 7020,
"hgvs_c": "c.640C>T",
"hgvs_p": "p.Arg214Trp",
"transcript": "XM_011526013.3",
"protein_id": "XP_011524315.1",
"transcript_support_level": null,
"aa_start": 214,
"aa_end": null,
"aa_length": 628,
"cds_start": 640,
"cds_end": null,
"cds_length": 1887,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011526013.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "GAREM1",
"gene_hgnc_id": 26136,
"hgvs_c": "c.64-71751G>A",
"hgvs_p": null,
"transcript": "ENST00000583696.1",
"protein_id": "ENSP00000464185.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 35,
"cds_start": null,
"cds_end": null,
"cds_length": 108,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000583696.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MEP1B",
"gene_hgnc_id": 7020,
"hgvs_c": "c.548-2290C>T",
"hgvs_p": null,
"transcript": "XM_011526014.3",
"protein_id": "XP_011524316.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 577,
"cds_start": null,
"cds_end": null,
"cds_length": 1734,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011526014.3"
}
],
"gene_symbol": "MEP1B",
"gene_hgnc_id": 7020,
"dbsnp": "rs201959687",
"frequency_reference_population": 0.00004089422,
"hom_count_reference_population": 0,
"allele_count_reference_population": 66,
"gnomad_exomes_af": 0.0000253134,
"gnomad_genomes_af": 0.000190484,
"gnomad_exomes_ac": 37,
"gnomad_genomes_ac": 29,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.11331403255462646,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.061,
"revel_prediction": "Benign",
"alphamissense_score": 0.0683,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.49,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.573,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 2,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate"
],
"verdict": "Likely_benign",
"transcript": "NM_005925.3",
"gene_symbol": "MEP1B",
"hgnc_id": 7020,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.859C>T",
"hgvs_p": "p.Arg287Trp"
},
{
"score": -2,
"benign_score": 2,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate"
],
"verdict": "Likely_benign",
"transcript": "ENST00000583696.1",
"gene_symbol": "GAREM1",
"hgnc_id": 26136,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.64-71751G>A",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}