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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 18-34794065-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=34794065&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "18",
      "pos": 34794065,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000444659.6",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "NM_001386795.1",
          "protein_id": "NP_001373724.1",
          "transcript_support_level": null,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 770,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 2313,
          "cdna_start": 326,
          "cdna_end": null,
          "cdna_length": 6572,
          "mane_select": "ENST00000444659.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000444659.6",
          "protein_id": "ENSP00000405819.2",
          "transcript_support_level": 5,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 770,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 2313,
          "cdna_start": 326,
          "cdna_end": null,
          "cdna_length": 6572,
          "mane_select": "NM_001386795.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000598334.5",
          "protein_id": "ENSP00000470152.1",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 724,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 2175,
          "cdna_start": 503,
          "cdna_end": null,
          "cdna_length": 3201,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000399121.9",
          "protein_id": "ENSP00000382072.5",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 690,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 2073,
          "cdna_start": 484,
          "cdna_end": null,
          "cdna_length": 6490,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000598142.5",
          "protein_id": "ENSP00000470716.1",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 686,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 2061,
          "cdna_start": 234,
          "cdna_end": null,
          "cdna_length": 2509,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000595022.5",
          "protein_id": "ENSP00000473078.1",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 683,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 2052,
          "cdna_start": 477,
          "cdna_end": null,
          "cdna_length": 6016,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000348997.9",
          "protein_id": "ENSP00000336682.4",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 567,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 1704,
          "cdna_start": 340,
          "cdna_end": null,
          "cdna_length": 4518,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000598774.6",
          "protein_id": "ENSP00000472031.1",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 513,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 1542,
          "cdna_start": 487,
          "cdna_end": null,
          "cdna_length": 2671,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000315456.10",
          "protein_id": "ENSP00000322519.5",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 374,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 1125,
          "cdna_start": 501,
          "cdna_end": null,
          "cdna_length": 1706,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000554864.7",
          "protein_id": "ENSP00000451516.2",
          "transcript_support_level": 1,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 371,
          "cds_start": 177,
          "cds_end": null,
          "cds_length": 1116,
          "cdna_start": 484,
          "cdna_end": null,
          "cdna_length": 1680,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
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          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.-109A>G",
          "hgvs_p": null,
          "transcript": "ENST00000684377.1",
          "protein_id": "ENSP00000506757.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 618,
          "cds_start": -4,
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          "cds_length": 1857,
          "cdna_start": null,
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          "cdna_length": 6139,
          "mane_select": null,
          "mane_plus": null,
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          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "DTNA",
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          "hgvs_c": "c.-109A>G",
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          "transcript": "ENST00000680767.2",
          "protein_id": "ENSP00000505379.2",
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          "mane_select": null,
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        },
        {
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            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_rank": 7,
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          "exon_count": 19,
          "intron_rank": null,
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          "gene_symbol": "DTNA",
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          "hgvs_c": "c.-109A>G",
          "hgvs_p": null,
          "transcript": "ENST00000682581.1",
          "protein_id": "ENSP00000507924.1",
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          "cds_start": -4,
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        {
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          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.-109A>G",
          "hgvs_p": null,
          "transcript": "ENST00000682923.1",
          "protein_id": "ENSP00000508131.1",
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          "aa_length": 418,
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          "cdna_start": null,
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        },
        {
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          ],
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          "gene_symbol": "DTNA",
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          "transcript": "ENST00000681274.1",
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        {
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          ],
          "exon_rank": 2,
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          "intron_rank": null,
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          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.-109A>G",
          "hgvs_p": null,
          "transcript": "ENST00000585446.1",
          "protein_id": "ENSP00000507645.1",
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          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": null,
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        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
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          "protein_coding": true,
          "strand": true,
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          ],
          "exon_rank": 4,
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          "exon_count": 23,
          "intron_rank": null,
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          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "NM_001386788.1",
          "protein_id": "NP_001373717.1",
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          "cdna_start": 326,
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          "cdna_length": 4038,
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        },
        {
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          "gene_symbol": "DTNA",
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          "hgvs_c": "c.177A>G",
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          "transcript": "ENST00000679796.1",
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        {
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          ],
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          "gene_symbol": "DTNA",
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        },
        {
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          "consequences": [
            "missense_variant"
          ],
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          "intron_rank": null,
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          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
          "hgvs_c": "c.177A>G",
          "hgvs_p": "p.Ile59Met",
          "transcript": "ENST00000399113.7",
          "protein_id": "ENSP00000382064.3",
          "transcript_support_level": 5,
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          "cds_start": 177,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": 177,
          "cdna_end": null,
          "cdna_length": 2232,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "M",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "DTNA",
          "gene_hgnc_id": 3057,
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      "gene_symbol": "DTNA",
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      "dbsnp": "rs1057518968",
      "frequency_reference_population": 0.000009293738,
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      "allele_count_reference_population": 15,
      "gnomad_exomes_af": 0.00000820905,
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      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.5272309184074402,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.517,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.7321,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.09,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 1.072,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "acmg_score": -3,
      "acmg_classification": "Likely_benign",
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      "acmg_by_gene": [
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          "verdict": "Likely_benign",
          "transcript": "ENST00000444659.6",
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          "inheritance_mode": "AD",
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          "hgvs_p": "p.Ile59Met"
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      "clinvar_disease": "Cardiac arrhythmia,Left ventricular noncompaction 1,Noncompaction cardiomyopathy",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "LP:2 US:1",
      "phenotype_combined": "Noncompaction cardiomyopathy;Cardiac arrhythmia|Left ventricular noncompaction 1",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}