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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 18-36527489-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=36527489&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "18",
"pos": 36527489,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_001281740.3",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "NM_001281740.3",
"protein_id": "NP_001268669.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1622,
"cds_start": null,
"cds_end": null,
"cds_length": 4869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000590592.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001281740.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000590592.6",
"protein_id": "ENSP00000466937.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1622,
"cds_start": null,
"cds_end": null,
"cds_length": 4869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001281740.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000590592.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000257209.8",
"protein_id": "ENSP00000257209.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1439,
"cds_start": null,
"cds_end": null,
"cds_length": 4320,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000257209.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000359247.8",
"protein_id": "ENSP00000352186.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1422,
"cds_start": null,
"cds_end": null,
"cds_length": 4269,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000359247.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863116.1",
"protein_id": "ENSP00000533175.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1642,
"cds_start": null,
"cds_end": null,
"cds_length": 4929,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863116.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863106.1",
"protein_id": "ENSP00000533165.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1625,
"cds_start": null,
"cds_end": null,
"cds_length": 4878,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863106.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863118.1",
"protein_id": "ENSP00000533177.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1620,
"cds_start": null,
"cds_end": null,
"cds_length": 4863,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863118.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863108.1",
"protein_id": "ENSP00000533167.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1617,
"cds_start": null,
"cds_end": null,
"cds_length": 4854,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863108.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.562+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863113.1",
"protein_id": "ENSP00000533172.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1614,
"cds_start": null,
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"cds_length": 4845,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863113.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863107.1",
"protein_id": "ENSP00000533166.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863107.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 28,
"intron_rank": 5,
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"gene_symbol": "FHOD3",
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"hgvs_c": "c.511+14946T>C",
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"transcript": "ENST00000863109.1",
"protein_id": "ENSP00000533168.1",
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"cds_start": null,
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},
{
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],
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"exon_count": 27,
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"gene_symbol": "FHOD3",
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"hgvs_c": "c.511+14946T>C",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 5,
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"gene_symbol": "FHOD3",
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"hgvs_c": "c.511+14946T>C",
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},
{
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],
"exon_rank": null,
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"gene_symbol": "FHOD3",
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"hgvs_c": "c.511+14946T>C",
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},
{
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"strand": true,
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],
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"intron_rank": 5,
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"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863117.1",
"protein_id": "ENSP00000533176.1",
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"feature": "ENST00000863117.1"
},
{
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"strand": true,
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],
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"intron_rank": 5,
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"gene_symbol": "FHOD3",
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"transcript": "ENST00000863112.1",
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},
{
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"strand": true,
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],
"exon_rank": null,
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"intron_rank": 5,
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"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.562+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000957408.1",
"protein_id": "ENSP00000627467.1",
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},
{
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],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 5,
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"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000863114.1",
"protein_id": "ENSP00000533173.1",
"transcript_support_level": null,
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},
{
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"strand": true,
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],
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"intron_rank": 5,
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"gene_symbol": "FHOD3",
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"hgvs_c": "c.511+14946T>C",
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"transcript": "NM_025135.5",
"protein_id": "NP_079411.2",
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},
{
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"strand": true,
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],
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"intron_rank": 5,
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"gene_symbol": "FHOD3",
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},
{
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],
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"gene_symbol": "FHOD3",
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"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "NM_001281739.3",
"protein_id": "NP_001268668.1",
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"biotype": "protein_coding",
"feature": "NM_001281739.3"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FHOD3",
"gene_hgnc_id": 26178,
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null,
"transcript": "ENST00000957407.1",
"protein_id": "ENSP00000627466.1",
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"mane_plus": null,
"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
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"gene_symbol": "FHOD3",
"hgnc_id": 26178,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.511+14946T>C",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}