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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 18-45063197-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=45063197&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "18",
"pos": 45063197,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000649279.2",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "NM_015559.3",
"protein_id": "NP_056374.2",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4596,
"cdna_end": null,
"cdna_length": 9909,
"mane_select": "ENST00000649279.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "ENST00000649279.2",
"protein_id": "ENSP00000497406.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4596,
"cdna_end": null,
"cdna_length": 9909,
"mane_select": "NM_015559.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "NM_001379141.1",
"protein_id": "NP_001366070.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4785,
"cdna_end": null,
"cdna_length": 10098,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "NM_001379142.1",
"protein_id": "NP_001366071.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4629,
"cdna_end": null,
"cdna_length": 9942,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "ENST00000677068.1",
"protein_id": "ENSP00000504398.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4669,
"cdna_end": null,
"cdna_length": 6280,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "ENST00000677077.1",
"protein_id": "ENSP00000503656.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4641,
"cdna_end": null,
"cdna_length": 9954,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "ENST00000677130.1",
"protein_id": "ENSP00000503094.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4708,
"cdna_end": null,
"cdna_length": 10021,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "ENST00000678152.1",
"protein_id": "ENSP00000502995.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
"cds_end": null,
"cds_length": 4791,
"cdna_start": 4536,
"cdna_end": null,
"cdna_length": 9849,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4119G>A",
"hgvs_p": "p.Val1373Val",
"transcript": "NM_001410862.1",
"protein_id": "NP_001397791.1",
"transcript_support_level": null,
"aa_start": 1373,
"aa_end": null,
"aa_length": 1539,
"cds_start": 4119,
"cds_end": null,
"cds_length": 4620,
"cdna_start": 4425,
"cdna_end": null,
"cdna_length": 9738,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4119G>A",
"hgvs_p": "p.Val1373Val",
"transcript": "ENST00000677699.1",
"protein_id": "ENSP00000503964.1",
"transcript_support_level": null,
"aa_start": 1373,
"aa_end": null,
"aa_length": 1539,
"cds_start": 4119,
"cds_end": null,
"cds_length": 4620,
"cdna_start": 4425,
"cdna_end": null,
"cdna_length": 9738,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4368G>A",
"hgvs_p": "p.Val1456Val",
"transcript": "XM_024451149.2",
"protein_id": "XP_024306917.1",
"transcript_support_level": null,
"aa_start": 1456,
"aa_end": null,
"aa_length": 1622,
"cds_start": 4368,
"cds_end": null,
"cds_length": 4869,
"cdna_start": 4863,
"cdna_end": null,
"cdna_length": 10176,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4368G>A",
"hgvs_p": "p.Val1456Val",
"transcript": "XM_024451150.2",
"protein_id": "XP_024306918.1",
"transcript_support_level": null,
"aa_start": 1456,
"aa_end": null,
"aa_length": 1622,
"cds_start": 4368,
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"cds_length": 4869,
"cdna_start": 4674,
"cdna_end": null,
"cdna_length": 9987,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4368G>A",
"hgvs_p": "p.Val1456Val",
"transcript": "XM_024451151.2",
"protein_id": "XP_024306919.1",
"transcript_support_level": null,
"aa_start": 1456,
"aa_end": null,
"aa_length": 1622,
"cds_start": 4368,
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"cds_length": 4869,
"cdna_start": 4682,
"cdna_end": null,
"cdna_length": 9995,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4368G>A",
"hgvs_p": "p.Val1456Val",
"transcript": "XM_024451152.2",
"protein_id": "XP_024306920.1",
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"cdna_start": 4747,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4368G>A",
"hgvs_p": "p.Val1456Val",
"transcript": "XM_047437475.1",
"protein_id": "XP_047293431.1",
"transcript_support_level": null,
"aa_start": 1456,
"aa_end": null,
"aa_length": 1622,
"cds_start": 4368,
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"cdna_start": 4707,
"cdna_end": null,
"cdna_length": 10020,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "XM_024451154.2",
"protein_id": "XP_024306922.1",
"transcript_support_level": null,
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"aa_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val",
"transcript": "XM_047437476.1",
"protein_id": "XP_047293432.1",
"transcript_support_level": null,
"aa_start": 1430,
"aa_end": null,
"aa_length": 1596,
"cds_start": 4290,
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"cds_length": 4791,
"cdna_start": 4604,
"cdna_end": null,
"cdna_length": 9917,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4197G>A",
"hgvs_p": "p.Val1399Val",
"transcript": "XM_024451156.2",
"protein_id": "XP_024306924.1",
"transcript_support_level": null,
"aa_start": 1399,
"aa_end": null,
"aa_length": 1565,
"cds_start": 4197,
"cds_end": null,
"cds_length": 4698,
"cdna_start": 4692,
"cdna_end": null,
"cdna_length": 10005,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.4119G>A",
"hgvs_p": "p.Val1373Val",
"transcript": "XM_047437477.1",
"protein_id": "XP_047293433.1",
"transcript_support_level": null,
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"aa_end": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.3813G>A",
"hgvs_p": "p.Val1271Val",
"transcript": "XM_024451157.2",
"protein_id": "XP_024306925.1",
"transcript_support_level": null,
"aa_start": 1271,
"aa_end": null,
"aa_length": 1437,
"cds_start": 3813,
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"cdna_start": 51476,
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"mane_select": null,
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},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.3813G>A",
"hgvs_p": "p.Val1271Val",
"transcript": "XM_047437479.1",
"protein_id": "XP_047293435.1",
"transcript_support_level": null,
"aa_start": 1271,
"aa_end": null,
"aa_length": 1437,
"cds_start": 3813,
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"cds_length": 4314,
"cdna_start": 97602,
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"cdna_length": 102915,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.3813G>A",
"hgvs_p": "p.Val1271Val",
"transcript": "XM_047437480.1",
"protein_id": "XP_047293436.1",
"transcript_support_level": null,
"aa_start": 1271,
"aa_end": null,
"aa_length": 1437,
"cds_start": 3813,
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"cds_length": 4314,
"cdna_start": 92657,
"cdna_end": null,
"cdna_length": 97970,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"hgvs_c": "c.3633G>A",
"hgvs_p": "p.Val1211Val",
"transcript": "XM_047437481.1",
"protein_id": "XP_047293437.1",
"transcript_support_level": null,
"aa_start": 1211,
"aa_end": null,
"aa_length": 1377,
"cds_start": 3633,
"cds_end": null,
"cds_length": 4134,
"cdna_start": 92355,
"cdna_end": null,
"cdna_length": 97668,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000267101",
"gene_hgnc_id": null,
"hgvs_c": "n.1048C>T",
"hgvs_p": null,
"transcript": "ENST00000764922.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1354,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "SETBP1",
"gene_hgnc_id": 15573,
"dbsnp": "rs139896661",
"frequency_reference_population": 0.0003909934,
"hom_count_reference_population": 1,
"allele_count_reference_population": 631,
"gnomad_exomes_af": 0.000385805,
"gnomad_genomes_af": 0.000440906,
"gnomad_exomes_ac": 564,
"gnomad_genomes_ac": 67,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 1,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.5199999809265137,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.52,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.372,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -21,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS1,BS2",
"acmg_by_gene": [
{
"score": -21,
"benign_score": 21,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "ENST00000649279.2",
"gene_symbol": "SETBP1",
"hgnc_id": 15573,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.4290G>A",
"hgvs_p": "p.Val1430Val"
},
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong"
],
"verdict": "Benign",
"transcript": "ENST00000764922.1",
"gene_symbol": "ENSG00000267101",
"hgnc_id": null,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.1048C>T",
"hgvs_p": null
}
],
"clinvar_disease": "not provided,not specified",
"clinvar_classification": "Benign/Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:1 B:1",
"phenotype_combined": "not specified|not provided",
"pathogenicity_classification_combined": "Benign/Likely benign",
"custom_annotations": null
}
],
"message": null
}